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DIFFERENTIATION AND MORPHOGENESIS Cheat Sheet (DRAFT) by

Differentiation and morphogenesis are closely related processes that are essential for the proper development of an organism. Differentiation produces the specialized cell types that are required for tissue and organ function, while morphogenesis organizes these cells into the complex structures that make up an organism.

This is a draft cheat sheet. It is a work in progress and is not finished yet.

THE PLANE AND SYMMETRY OF CELL DIVISION

The plane (direc­tion) and symmetry of cell division are immensely important in determ­ining plant form.
Asymme­trical cell division, in which one daughter cell receives more cytoplasm than the other during mitosis, is fairly common in plant cells and usually signals a key event in develo­pment

PLANT DEVELO­PMENT

PLANT DEVELO­PMENT INVOLVES COMMIT­MENTS
Commitment
the process whereby a cell becomes firmly committed to just one of the several develo­pmental pathways that are open to it before expressing the phenotype of the differ­ent­iated cell type.
Commit­men­t" or "­det­erm­ina­tio­n"
is a general term that includes setting up of polarities and pattern formation
Inherent in the concept of polarity is the presence of poles, typically two, with an axis running between them, thus apical­-basal polarity, or in and out (radial) polarity
 
Commitment occurs in steps, and choices at each step are limited to a few options
Plant develo­pment is hierar­chical and involves a series of progre­ssive commit­ments.
Commitment during Embryo­genesis
Illust­rated by the first division of the zygote setting out the apical and basal cells, which give rise to the embryo proper and suspensor, respec­tively
Suspensor
– structure that connects endosperm to an embryo. It pushes the embryo towards the endosperm in order to draw its nutrition.
At the tissue level, the protoderm is separated from the central cells, followed by the separation of the central cells into ground meristem and procam­bium, and later, in roots, separation of the ground meristem into cortex and endodermis and of procambium into pericycle and vascular tissues.
Protoderm cells normally will form epidermis, epidermal hairs, guard cells, and elaborate cuticle, but will not form xylem or phloem cells
In contrast, procambial cells will normally form vascular tissues, pericycle, and vascular cambium and will not suddenly form glandular epidermal hairs or elaborate cutin.
Vascular cambium, when establ­ished, is committed to giving rise to deriva­tives by specific planes of cell division, and the deriva­tives in turn are committed to forming xylem or phloem cells.

GENE ACTIVITY

Gene activity involves at least three types of genes:
a. Housek­eeping genes
that encode proteins required for general housek­eeping, such as enzymes involved in respir­ation, sugar uptake, or synthesis of proteins or synthe­sis­/re­pli­cation of nucleo­tides and polynu­cle­otides
b. Genes that are expressed in a cell- and tissue specific manner and which encode proteins that are specific for the channe­lized route or the designated function.
c. Regulatory genes
that specify pattern or that regulate the expression of cell/t­issue specif­icity

Mechanism of Differ­ent­iation

The functions are performed effici­ently and to the benefit of the whole organism, but at the price that the specia­lized cells, tissues, and organs have only limited parts of their genome open for transc­rip­tion.
◼ Typical leaf mesophyll cell, which is specia­lized for photos­ynt­hesis, may have 40-50 well differ­ent­iated chloro­plasts.
In contrast, a root parenchyma cell storing starch, will have no chloro­plasts, no chloro­phyll and associated proteins, and no RUBISCO. Instead, it would have amylop­lasts (starc­h-s­toring plastids) and large amounts of ADP glucose pyroph­osp­hor­ylase
The root and mesophyll cells have the same genomic DNA, but they are specia­lized for different functions because different genes are expressed in the two types of cells.
Differ­ential gene expression is used in a broad sense to include all gene-d­irected activity, not only gene transc­rip­tion, but also posttr­ans­cri­ptional and posttr­ans­lat­ional modifi­cat­ions, as well as gene silencing.
Differ­ential gene activity is the basis for the phenomenon known as epigen­esis, the unfolding of the develo­pmental program of an organism

CELL DIFFER­ENT­IATION

a process where cells become bioche­mically and struct­urally specia­lized to carry out specific functions
◼occurs through cell determ­ina­tion, a series of molecular events in which activities of certain genes are altered in ways that cause a cell to progre­ssively commit to a particular differ­ent­iation pathway

ORIENT­ATION OF CELL EXPANSION

he orient­ation of the cellulose microf­ibrils affects the direction of cell expansion

PREPRO­PHASE BAND

Prepro­phase band
the microt­ubules in the cytoplasm which becomes concen­trated into a ring.
 
disappears predicts the future plane of cell division.

THE PLANE AND SYMMETRY OF CELL DIVISION

The plane (direc­tion) and symmetry of cell division are immensely important in determ­ining plant form.
Asymme­trical cell division, in which one daughter cell receives more cytoplasm than the other during mitosis, is fairly common in plant cells and usually signals a key event in develo­pment

Arabid­opsis thaliana

A weed of the mustard family (Brass­icaceae Family)
Plant model system for genetic studies
The first plant to have its entire genome sequenced
Arabid­opsis has about 26,700 protei­n-e­ncoding genes
 

Shoot vs Leaf Determ­ination

Shoot vs Leaf Determ­ination
Young leaves can be excised from the shoot apex and placed in a culture medium, and they develop and form a complete leaf.
In many ferns, leaf develo­pment occurs over a long period
n one experi­ment, primordia P1 through P10 were excised and cultured.
Results clearly showed that younger primordia were undete­rmined and produced shoots, both stem and leaves, whereas older primordia were progre­ssively more committed (or determ­ined) to produce leaves only

Shoot Meristem Identity

Plant homeobox genes are required for cell fate determ­ina­tion, as well as pattern definition and specif­ication of organ/­tissue bounda­ries.
KNOX (for knotte­d-like homeobox)
family of genes, named after the maize KNOTTEDl (KNl) gene
 
is further divided into two classes, I and II. Class I KNOX genes
 
are expressed in shoot meristems and are downre­gulated in primordia of lateral organs.
For instance, the KNl gene in maize and its ortholog STM gene in Arabid­opsis are first expressed in the globul­ar-­heart stage embryo in cells of the presum­ptive shoot apex, but not in cotyledons (scutellum in maize).
Subseq­uently, they are expressed in both vegetative and floral shoot meristems of the adult plant, but are not expressed in cells on the periphery, which are the founder cells of lateral organs, such as leaves or petals.

Floral Meristem and Organ Identity

Floral meristems express other regulatory genes that distin­guish them from vegetative shoot meristems
In dicots, many of these genes belong to the MADS-box gene family.
LEAFY {LEY), a non-MA­DS-box gene, and APETALAl {API), a MADS-box gene, in Arabid­opsis encode transc­ription factors that act as primary determ­inants of floral meristem identity.
API also specifies an organ, the sepals whorl in Arabid­opsis flower.
Loss-o­f-f­unction mutations in these genes (e.g., Ify, apl) lead to a partial conversion of presum­ptive floral sites into shoots.

EXTERNAL OR INTERNAL PERTUR­BATIONS

EXTERNAL OR INTERNAL PERTUR­BATIONS MAY CAUSE A REVERSAL OF ESTABL­ISHED COMMIT­MENTS
The extent of reversal, whether partial, i.e., going back a few steps, or complete, going back to the zygotic stage, seems to be a function of the extent of pertur­bation. Two terms, dediff­ere­nti­ation and rediff­ere­nti­ation, are used to denote a reversal of establ­ished patterns and differ­ent­iation along new lines.
Dediff­ere­nti­ation -
means a programmed change in the metabolic machinery of a cell, shutting down of genes that were being transc­ribed in connection with the establ­ished function of the cell, and adjustment to new condit­ions.
Rediff­ere­nti­ation
Induction of new sets of genes and their transc­ription

MORPHO­GENESIS

morpho­genesis
The develo­pment of form, in which differ­ent­iated cells in specific locations become spatially organized into recogn­izable structures
pattern formation
The develo­pment of specific structures in specific locations
 
a series of steps requiring signalling between cells, changes in the shapes and metabolism of certain cells and precise cell intera­ctions
Many develo­pmental biologists postulate that pattern formation is
determined by positional inform­ation in the form of signals that
contin­uously indicate to each cell its location within a developing
structure. According to this hypoth­esis, each cell within a
developing organ responds to positional inform­ation from
neighb­oring cells by differ­ent­iating into a particular cell type,
oriented in a particular way

POLARITY IN SHOOT AND ROOT CUTTINGS

Plants typically have an axis, with a root end and a shoot end.
Advent­itious roots form within the root end of a stem cutting, and advent­itious shoots arise from the shoot end of a root cutting.
Morpho­genesis in plants is often under the control of homeotic genes, master regulatory genes that mediate many of the major events in an indivi­dual's develo­pment.
Over expression of KNOTTED-J gene in tomato plants results in leaves that are "­sup­erc­omp­oun­d" (right) compared with normal leaves
◼The morpho­logical changes that arise from these transi­tions in shoot apical meristem activity are called phase changes

GENETIC CONTROL OF FLOWER DEVELO­PMENT

Flower formation involves a phase change from vegetative growth to reprod­uctive growth.
When plants recognize an opport­unity to flower, signals are transm­itted through florigen.
The first genetic change involves the switch from the vegetative to the floral state.
The second genetic event follows the commitment of the plant to form flowers.

ABC MODEL OF FLOWER DEVELO­PMENT

In the simple ABC model of floral develo­pment, three gene activities (termed A, B, and C-func­tions) interact to determine the develo­pmental identities of the organ primordia within the floral meristem
A mutation in a plant organ identity gene can cause abnormal floral develo­pment