Cheatography
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                    Cell Communication & Cell Cycle
                    
                 
                    
        
        
            
    
        
                                    This is a draft cheat sheet. It is a work in progress and is not finished yet.
                    
        
                
        
            
                                
            
                
                                                | Cell Signals
                        
                                                                                    
                                                                                            |  1. Direct Contact |  
                                                                                            | ↳ plasmodesmata of plants~ | open channels through the cell wall connecting adjacent cells allowing substances to pass between |  
                                                                                            | ↳ cell-cell recognition~ | interaction between molecules protruding from their surfaces (immune cells) |  
                                                                                            |  2. Local Signaling |  
                                                                                            | ↳ paracrine signaling~ | secreting cell acts on nearby target cells by discharging growth factor molecules |  
                                                                                            | ↳ synaptic signaling~ | nerve cells release neurotransmitter molecules into synapse |  
                                                                                            | 3. Long Distance |  
                                                                                            | ↳ animal hormones~ | cells secrete hormones into body fluids to target cell |  
                                                                                            | ↳ plant hormones~ | hormones move through the cells (by xylem) or diffuse through the air as a gas |  Step 1: Reception
                        
                                                                                    
                                                                                            | - ligand: | molecule that binds specifically to another molecule |  
                                                                                            | - plasma membrane receptors: | transmit information from extracellular environment to inside of the cell by changing shape or aggregating when a ligand binds |  
                                                                                            | ↳ cell surface receptors~ | 1. G protein-coupled receptors (GPCRs) |  
                                                                                            |  | 2. receptor tyrosine kinases (RTK) |  
                                                                                            |  | 3. ligand gates ion channels |  
                                                                                            | ↳ intracellular receptor proteins |  G Protein-Coupled Receptor (GPCR)
                        
                            - function/activity: 1. embryonic development 2. sensory reception (smell, vision, etc.)*GPCR Sequence*
 ↳ receptor is activated & changes shape
 ↳ binds to inactive G protein = GTP to replace GDP (activating G protein)
 ↳ G protein binds to an enzyme (change in shape/activity)
 ↳ enzyme triggers next step for response
 ↳ G protein inactivates by hydrolyzing  bound GATP to GDP
 Receptor Tyrosine Kinases (RTK)
                        
                            - kinase: enzyme that catalyzes the transfer of phosphate groups- differs from GPCR by triggering many pathways
 *RTK Sequence*
 ↳ binding of signal causes 2 receptor monomers to come together = dimer
 ↳ tyrosine kinase region activated by ATP (adds a phosphate group)
 ↳ receptor recognized by relay proteins
 ↳ proteins bind (change shape) & activates protein
 ↳ transduction/response triggered
 Ligand Gated Ion Channels
                        
                            - for larger/hydrophilic molecules- can be controlled by electrical conditions -- voltage-gated ion channels
 *Ligand Channel Sequence*
 ↳ signal molecule causes receptor gate to open/close
 ↳ ions flow through (NA+ or Ca+)
 Intracellular Receptor Proteins
                        
                                                                                    
                                                                                            | 2 areas present~ | cytoplasm |  
                                                                                            |  | nucleus of target cells |  
                                                                                            | 3 signal molecule types~ | 1. steroid hormones |  
                                                                                            |  | 2. thyroid hormones |  
                                                                                            |  | 3. nitric oxide |  
                                                                                            | - once receptor protein is activated the signal molecules enter the nucleus and turn on specific genes |  Step 2: Transduction
                        
                                                                                    
                                                                                            | molecular interactions relay signals from receptors to target molecules in the cell |  
                                                                                            |  | ex) phosphorylation cascade; second messengers |  
                                                                                            | - signal amplification: | molecules in a pathway transmit the signal to many molecules at the next step |  
                                                                                            | - advantage of multistep pathway responses~ | more coordination & regulation (fine-tuning of response) |  Protein Phosphorylation
                        
                            - protein phosphatases: enzymes that remove phosphate groups (dephosphorylation)- acts as a molecular switch to turn activities on/off or up/down
 *Phosphorylation Sequence*
 ↳ a molecules receive phosphate group from ATP (serine & threonine) = phosphorylation
 ↳ next molecule is activated in the pathway
 ↳ process continues to trigger response
 Second Messengers
                        
                            - second messenger: small, nonprotein, water-soluble molecule/ion in transduction pathwaysex) cAMP, Ca2+
 - cAMP level rise when epinephrine binds to liver membrane receptors
 ↳ causing a break down of glucose
 ↳ levels go back down from phosphodiesterase (cAMP to AMP)
 - 3 possible responses to calcium =
 ↳ 1. muscle cell contration 2. secretion of substances 3. cell division
 ↳ calcium released from ER when signal molecule (IP3) binds to cell
 Step 3: Response
                        
                                                                                    
                                                                                            | - cell signaling leads to regulation of transcription/cytoplasmic activities |  
                                                                                            | - many pathways regulate protein synthesis by turning specific genes on/off |  
                                                                                            | 4 FINE TUNING RESPONSE |  
                                                                                            | 1. signal amplification~ | # of activated products gets increasingly bigger |  
                                                                                            |  | proteins process many molecules |  
                                                                                            | 2. specificity of signaling & coordination of response~ | different kinds of cells have different collections of proteins (diff. responses from same signal) |  
                                                                                            | 3. efficiency~ | scaffolding proteins: large relay proteins w/ several relay proteins attached |  
                                                                                            |  | creates more than one pathway |  
                                                                                            | 4. termination of signal~ | reverse change from prior signal to receive new one |  
                                                                                            |  | by dephosphorization of relay proteins |  |  | Apoptosis
                        
                                                                                    
                                                                                            | " programmed cell death" |  
                                                                                            | - general process~ |  
                                                                                            | ↳ DNA chopped up & organelles fragmented |  
                                                                                            | ↳ cell shrinks & becomes lobe shaped |  
                                                                                            | ↳ cell's parts are packaged into vesicles |  
                                                                                            | ↳ cell parts engulfed & digested by scavenger cells |  
                                                                                            | - processes this is needed for~ |  
                                                                                            | 1. development of nervous system |  
                                                                                            | 2. operation of immune system |  
                                                                                            | 3. morphogenesis of hands/feet/paws |  Cell Cycle Background
                        
                                                                                    
                                                                                            | - what two organism have cell division the same as reproduction? | 1. prokaryotes 2. unicellular eukaryotes |  
                                                                                            | - what are the roles of cell division? | ↳ growth, repair, reproduction, & replacement |  
                                                                                            | - how do the genomes of prokaryotes & eukaryotes differ? | ↳ eukaryotes~ # of DNA molecules; larger; linear DNA; lots of non-coding DNA |  
                                                                                            |  | ↳ prokaryotes~ single DNA molecule; smaller; looped DNA; more coding DNA |  
                                                                                            | - somatic cell: | any cell in an organism except reproductive cells (body cells) |  
                                                                                            | - sister chromosome: | 2 copies of a duplicated chromosome attached at the centromere |  
                                                                                            | - mitosis: | process of nuclear division (P, PM, M, A, T) |  
                                                                                            | - cytokinesis: | division of the cytoplasm to form 2 separate daughter cells |  
                                                                                            | - centromeres | produce microtubules (in plants & animals) |  
                                                                                            | - centrioles | microtubules that spindle fibers attach to (in animals only) |  
                                                                                            | - binary fission: | asexual reproduction by "division in half" (prokaryotes & unicellular eukaryotes) |  
                                                                                            | - origin of replication: | site where replication of DNA molecule begins |  
                                                                                            | - density-dependent inhibition: | cell stop dividing when in contact with one another |  
                                                                                            | - anchorage dependence: | cell must attach to a substance in order to divide |  Interphase
                        
                                                                                    
                                                                                            | - 3 sub phases of interphase~ |  
                                                                                            |  | cell growth |  
                                                                                            | ↳ S phase (synthesis)=  | DNA replication |  
                                                                                            |  | cell components double (prep to divide) |  
                                                                                            | - different rates of division~ |  
                                                                                            | ↳ skin cells = | divide frequently |  
                                                                                            | ↳liver cells = | divide when needed |  
                                                                                            | ↳ nerve/muscle cells =  | don't divide at all |  
                                                                                            | - 3 major checkpoints~ |  
                                                                                            |  |  
                                                                                            |  |  
                                                                                            | 3. Metaphase |  
                                                                                            | - platelet-derived growth factor (PDGF): | made by platelets to help heal wounds |  
                                                                                            |  | PDGF bind to membrane receptor ➜  transduction pathway triggered ➜ cell passes G 1
  checkpoint ➜ cell division |  G1 Checkpoint
                        
                            - a.k.a. 'restriction point'↳ if gets go-ahead signal... continues on to divide
 ↳ if doesn't get go-ahead signal... exits cycle/goes into G0 phase (nondividing)
 G2 Checkpoint
                        
                            - protein kinases: give go-ahead signal at G1 & G2 checkpoints- cyclins: attach to kinases to make them active
 ↳ cyclin-dependent kinases (cdk) & cyclin combine to form...MPF (maturation-promoting factors)
 ↳ MPF formation occurs when cyclin accumulates = mitosis initiated
 ↳ MPF breaks down during anaphase (cyclin destroyed; cdk stays to be reused)
 Metaphase Checkpoint
                        
                            - anaphase won't begin until chromosomes are properly attached to spindles Cancer
                        
                                                                                    
                                                                                            | - cancer cells are a change in 1+ genes that result in... | faulty cell cycle control |  
                                                                                            | - normal cell cycle amount = | 20-50 times |  
                                                                                            | - cancer cell cycle amount = | continuous |  
                                                                                            | - benign tumor: | cells that are NOT capable of surviving at a new site (slow growing; small; localized) |  
                                                                                            | - malignant tumor: | cancerous tumor capable of surviving in a new site (fast growing; large; invasive) |  
                                                                                            | - metastasis: | the spread of cancer cells to a different location from the original site |  |