| What is Cell Communication?
                        
                                                                                    
                                                                                            | -- Cell communication is how cells sense and react to their environment and/or signals from other cells |  
                                                                                            | -- It can be through direct cell-to-cell contact |  
                                                                                            | -- It consists of ligands and receptors; ligands are molecules that bind to receptors (signals); receptors are proteins that detect external signals (antenna) |  
                                                                                            | -- The signal always come from the exterior of the cell (extracellular) |  Steps of Cell Signaling:
                        
                                                                                    
                                                                                            | 1. Reception -- ligand binds to receptor causing receptor to change shape |  
                                                                                            | 2. Transduction -- information transfer from receptor throughout cell |  
                                                                                            | 3. Response -- how the cell changes |  Understanding Pathway Diagrams
                        
                                                                                    
                                                                                            | -- Pointed arrows means activates |  
                                                                                            | -- Blunt arrow means inhibit |  
                                                                                            | -- For multi-step pathways you should simplify into the overall result |  
                                                                                            | -- Similar to math, if there is two inhibitions it would result in an activation |  Summary of Cell Signaling
                        
                                                                                    
                                                                                            | -- Different cell types can have different response to the same ligand because they have different receptors |  |  | RECEPTION
                        
                                                                                    
                                                                                            | -- Types of receptors: |  
                                                                                            |  -- Cell surface receptors |  
                                                                                            | Ligand-gated ion channels: | Receptors are ion channels that open and let ions cross the membrane |  
                                                                                            | G protein-coupled receptors (GPCR): | Receptors are associated with G protein. When the receptor is activated it causes the G protein to activate. The G protein activates enzymes. ligand --> GPCR --> G protein --> enzyme --> second messengers |  
                                                                                            | Receptor tyrosine kinases (RTK): | Kinases are enzymes that add phosphate groups to other molecules. When a ligand binds it turns on kinase activity of RTKs. |  
                                                                                            |  -- Intracellular receptors |  
                                                                                            | -- This is when the receptor is in side the cell. Unlike cell surface receptors, the ligands are nonpolar. These regulate gene expression. |  Types of Ligand
                        
                                    
                        | -- Ligands can be: gases ions, lipids, proteins, amino acids, nucleotides, etc |  Structure Determines Function
                        
                                                                                    
                                                                                            | -- Ligand binding to a receptor changes the receptors shape |  
                                                                                            | -- Change in receptor shape = change in receptor function |  TRANSDUCTION
                        
                                                                                    
                                                                                            |  Amplification |  
                                                                                            | -- When one ligand binding to one receptor it results in many molecules inside the cell | -- Each molecule in the signaling pathway can be recycled |  
                                                                                            |  Second Messengers |  
                                                                                            | -- These activate many enzymes within the cell | -- For example: Cyclic AMP. The activation of some GPCRs increase cAMP while others decrease cAMP. |  
                                                                                            | -- Activation of GPCRS regulate the production of second messengers | -- cAMP can activate other proteins like protein kinase A which is an important regulator of metabolic pathways |  
                                                                                            | the "first messenger" is the ligand binding to the receptor |  
                                                                                            |  Phosphorylation cascades |  
                                                                                            | -- Phosphorylation changes the shape of protein, in result changes the function |  RESPONSE
                        
                                                                                    
                                                                                            |  Common cellular response |  
                                                                                            | Gene expression: | activation of transcription of specific genes |  
                                                                                            | Enzyme activation: | turning on kinases |  
                                                                                            | Apoptosis: | programmed cell death in which the cell breaks down while protecting neighboring cells. It is important for development and a normal process in healthy organisms |  |  | CELL CYCLE
                        
                                                                                    
                                                                                            | -- There are four phases to the cell cycle |  
                                                                                            | G1 (gap 1) = cell growth |  
                                                                                            | S (synthesis) = DNA replication |  
                                                                                            | G2 (gap 2) = cell growth, prepare for mitosis |  
                                                                                            | M (mitosis) = cell division |  Regulation of Cell Cycle
                        
                                                                                    
                                                                                            | -- Cyclins are proteins that regulate cyclin-dependent kinases (CDKs) |  
                                                                                            | -- Cyclins/CDKs control which phase of the cell cycle a cell is in |  
                                                                                            | -- If the cell is not regulated, it can result in cancer which is abnormal growth due to the continuous progression through the cell cycle |  Diagram of The Cell CycleCell Cycle Checkpoints
                        
                                                                                    
                                                                                            | Checkpoints determine if the cell is ready to progress to the next phase of the cell cycle |  
                                                                                            | -- G1 checkpoint: | It checks whether the cell is big enough and has made the proper proteins for the synthesis phase. If not, the cell goes through a resting period (G0) until it is ready to divide. |  
                                                                                            | -- G2 checkpoint: | It checks whether DNA has been replicated correctly. If so, the cell continues on to mitosis. |  
                                                                                            | -- M checkpoint: | It checks whether mitosis is complete. If so, the cell divides, and the cycle repeats. |  MITOSIS
                        
                                                                                    
                                                                                            | -- Interphase | DNA is replicated, cell prepare for mitosis. The nuclear envelop are distant and the chromosomes are in the form of threadlike chromatin. |  
                                                                                            | -- Prophase | Chromatin condenses making the chromosomes visible and nuclear envelop breaks down |  
                                                                                            | -- Metaphase | The thick, coiled chromosomes, each with two chromatids, become aligned at the equatorial/metaphase plane |  
                                                                                            | -- Anaphase | Sister chromatids separate and the daughter chromosomes move toward the poles |  
                                                                                            | -- Telophase & Cytokinesis | The chromosomes are at the poles, and are becoming more diffuse. The nuclear envelop is reforming. They cytoplasm may be dividing. Then the division into two daughter cells. |  Mitosis vs. Meiosis (continued) | 
            
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