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Biochem Exam#1 Cheat Sheet (DRAFT) by

Biochem Exam #1 concepts

This is a draft cheat sheet. It is a work in progress and is not finished yet.

Domains of Life

Bacteria
Archaea
Eukarya
Cell type: Prokar­yotic
Cell type: Prokar­yotic
Cell type: Eukaryotic
Structure: No nucleus; circular DNA in a nucleoid
Structure: Similar to bacteria but with unique membrane lipids and genes more closely related to eukaryotes
Structure: True nucleus and membra­ne-­bound organelles
Habitat: Soil, water, inside living­/dead organisms
Habitat: Extreme enviro­nments (hot springs, salt lakes, deep sea vents)
Organisms: Animals, plants, fungi, and protists
Examples: E. coli, Strept­ococcus
Examples: Methan­ogens, haloph­iles, thermo­philes
Examples: Humans, yeast, algae

Chemical Compos­ition of a Typical Cell

Major Components by Mass:

Water (~70%): Main solvent; critical for bioche­mical reactions and molecular movement.

Proteins (~15%): Enzymes, structural support, signaling. Made of amino acids.

Nucleic Acids (~7%): DNA (genetic material) and RNA (protein synthe­sis).

Lipids (~2%): Membranes (phosp­hol­ipids), energy storage (trigl­yce­rides), signaling (stero­ids).

Polysa­cch­arides (~3%): Energy (glycogen, starch) and structural (cellulose in plants).

Ions & Small Molecules (~1%): Na⁺, K⁺, Cl⁻, Ca²⁺, metabo­lites, vitamins, cofactors.


By Elemental Compos­ition (by % of total atoms):

Hydrogen (H) – ~63%

Oxygen (O) – ~25.5%

Carbon (C) – ~9.5%

Nitrogen (N) – ~1.4%

Trace: Phosphorus (P), Sulfur (S), Sodium (Na), Potassium (K), Magnesium (Mg), Calcium (Ca), Chlorine (Cl), Iron (Fe), etc.
CHONPS = Carbon, Hydrogen, Oxygen, Nitrogen, Phosph­orus, Sulfur — the 6 essential elements in biomol­ecules.
 

Cytosol vs. Cytoplasm

Cytoplasm
The entire contents within the cell membrane, excluding the nucleus (in eukary­otes). Includes the cytosol and organe­lles.
Cytosol
The fluid portion of the cytoplasm. Aqueous, gel-like solution where many metabolic reactions occur. Does not include organe­lles.
Cytoplasm = Cytosol + Organelles (excluding the nucleus)

Nucleoid vs. Nucleus

Nucleoid
A region in prokar­yotic cells where the circular DNA (chrom­osome) is located. It is not surrounded by a membrane.
Nucleus
A membra­ne-­bound organelle in eukaryotic cells that contains linear chromo­somes (DNA) and controls gene expres­sion.
Nucleus = membra­ne-­bound
Nucleoid = no membrane

Most Abundant Elements in Living Organisms

CHON — make up ~96% of living matter:
C = Carbon
H = Hydrogen
O = Oxygen
N = Nitrogen
Living organisms are primarily composed of four elemen­ts—­carbon, hydrogen, oxygen, and nitrogen (CHON)­—be­cause they form stable, versatile bonds necessary for complex biological molecules. Carbon is central to life’s chemistry due to its unique ability to form diverse and stable molecular structures essential for metabo­lism, growth, and reprod­uction.
 

Trophic Classi­fic­ations (Energy & Carbon Sources)

Energy Source
 
Carbon Source
Photot­roph: Light (e.g., plants, algae)
 
Autotroph: CO₂ → organic compounds (e.g., plants, chemoa­uto­trophic bacteria)
Chemot­roph: Chemicals (e.g., animals, some bacteria)
 
Hetero­troph: Organic carbon from other organisms (e.g., animals, fungi)
Type
Energy Source
Carbon Source
Examples
Photoa­uto­troph
Light
CO₂
Plants, cyanob­acteria
Photoh­ete­rotroph
Light
Organic
Some protists, bacteria
Chemoa­uto­troph
Inorganic chem.
CO₂
Nitrif­ying, sulfur bacteria
Chemoh­ete­rotroph
Organic chem.
Organic
Animals, fungi, many bacteria