Cheatography
                https://cheatography.com
            
        
        
    
                   
                            
    
                    diagnostic assays run to determine Ab-Ag interaction
                    
                 
                    
        
        
            
    
        
                                    This is a draft cheat sheet. It is a work in progress and is not finished yet.
                    
        
                
        
            
                                
            
                
                                                | Immunofluorescence AssaysFluorescent Antibody Test (FA)
                        
                                                                                    
                                                                                            | Mechanism | Fluorescently labeled mAb to bind and illuminate a target Ag/Ab |  
                                                                                            | Designed to Detect | A sample's Antigen OR Antibody |  
                                                                                            | Reagent | mAb-FITC conjugate ~ Ab tagged with a Fluorescein |  
                                                                                            | Compatible Sample Types | Serum or tissue section |  
                                                                                            |  |  
                                                                                            | 	 Types |  
                                                                                            | 1. Direct (DFA) | Detection of sample's antigen |  
                                                                                            | Sample | Unknown Antigen in blood |  
                                                                                            | 2. Indirect (IFA) | Detection of sample's antibody |  
                                                                                            | Sample | Unknown Antibody in blood (Ag = known) |  
                                                                                            | Reagent | Secondary mAb-FITC conjugate |  Direct Fluorescent Antibody
                        
                                                                                    
                                                                                            | 	 Uses |  
                                                                                            | Bovine Viral Diarrhea Virus (BVDV) | Detection of live BVDV in bovine blood |  
                                                                                            | Rabies in Brain Necropsy | Detection of the Rabies virus in the brain tissue |  
                                                                                            |  |  
                                                                                            | Sample | Ag from culture/slide |  
                                                                                            | Known | mAb-FITC conjugate against antigen of interest |  
                                                                                            | Detects (unknown reactant) | Antigen from sample |  
                                                                                            | Reagent | mAb-FITC conjugate |  
                                                                                            |  |  
                                                                                            | 	 Results |  
                                                                                            | Positive Test | Fluorescence = Ag present |  
                                                                                            | Negative Test | No fluorescence = No Ag |  *Only ONE 'known' Ab is used in this test ~ so the known test component IS the Reagent DFA Example ~ BVDV
                        
                                    
                        | 1. Incubate patient serum (containing the virus) with a cultured cell line~ Cell-line must be permissive to BVDV infection
 2. Probe with mAb-FITC conj. that targets the viral Ag of BVDV
 |  DFA ~ Rabies Brain Necropsy Dx
                        
                                    
                        | DFA is required for an official Rabies Dx- An impression or tissue section of the euthanized animal's **Cerebellum, Hippocampus, and/or
 Brainstem** is collected
 - mAb-FITC targeting the Rabies virus' antigen
 |  Positive DFA of Rabies in the BrainIndirect Fluorescent Antibody Test (IFA)
                        
                                                                                    
                                                                                            | 	 Uses |  
                                                                                            | Porcine Reproductive and Respiratory Virus (PRRSV) | Detection of PRRSV Antibody in Porcine serum |  
                                                                                            | Titers | Highest serial dilution of serum with Ab - that fluoresces |  
                                                                                            | Dengue Fever/ChikV/Zika Virus |  
                                                                                            |  |  
                                                                                            | Sample | Serum |  
                                                                                            | Known | Antigen |  
                                                                                            | Detects (unknown reactant) | Antibody from serum (1ºAb) |  
                                                                                            | Reagent | Anti-spp. Ab-FITC conjugate (2ºAb) |  
                                                                                            |  |  
                                                                                            | 	 Results |  
                                                                                            | Positive Test | Fluorescence = Ab present |  
                                                                                            | Negative Test | No fluorescence = No Ab |  *This test uses TWO antibodies ~ a 1º and 2º antibody IFA Example ~ PRRSV
                        
                                    
                        | Detection of Antibody against PRRSV in Swine serum> Known: PRRSV infected cell line
 > Sample: Porcine serum incubated with cell line
 > 2ºAb Probe: Anti-pig IgG conjugated with FITC
 > Unknown: Antibody against PRRSV
 |  Results of PRRSV IFA TestIFAs Results for DENV 1-4/CHIKV/ZIKV |  | Enzyme-Linked Immunosorbent Assay (ELISA)ELISA
                        
                                                                                    
                                                                                            | 	 High sensitivity / Low specificity |  
                                                                                            |  |  
                                                                                            | 	 Test Types that Detect Antigen |  
                                                                                            | > | Direct ELISA |  
                                                                                            | or | Sandwich ELISA |  
                                                                                            | or | Antigen Capture ELISA |  
                                                                                            | or | Antigen ELISA |  
                                                                                            |  USES |  
                                                                                            | Heartworm Test (HWTM) | Using the Anti-HTWM-Ab-HRP |  
                                                                                            |  |  
                                                                                            | 	 Test Types that Detect Antibody |  
                                                                                            | > | Indirect ELISA |  
                                                                                            | or | Antibody ELISA |  
                                                                                            |  USES |  
                                                                                            | Titrations (titers) | Quantifies the amount of Ab present |  DIRECT (Ag Capture) ELISA
                        
                                                                                    
                                                                                            | Sample | Serum from patient |  
                                                                                            | Known | 1º Capture Ab (coats wells in tray) |  
                                                                                            | Detection of (unknown) | Antigen |  
                                                                                            | Reagent + Substrate* | 2º Detection Ab ~ specific to disease conjugated to enzyme |  
                                                                                            | Positive Test | Color change = Ag present |  
                                                                                            | Negative Test | No color change = No Ag |  * substrate = activates enzyme** The capture Ab and the detection Ab may be the same Ab > BUT ONLY the detection Ab will be tagged with the enzyme
 Ag Capture ELISA ~ HTWM Ag Detection
                        
                                    
                        | > 1º Capture Ab: Ab that targets Ab> Sample with unknown: Serum with HTWM Ag
 > Wash slide
 > 2º Detection Ab: Anti-HTWM-Ab-HRP
 > Add substrate to activate enzyme to show color change if bound
 |  HTWM Ag-Capture ELISA ResultsINDIRECT (Antibody) ELISA
                        
                                                                                    
                                                                                            | Sample | Serum from patient |  
                                                                                            | Known | Antigen (coating wells) |  
                                                                                            | Detection of (unknown) | 1º Ab in serum (spec. for Ag) |  
                                                                                            | Reagent + Substrate* | Anti-Ab 2º Detection Antibody-HRP conj. ~ *Targets hosts own Ab (1º Ab from serum) |  
                                                                                            | Positive Test | Color change = Ab present |  
                                                                                            | Negative Test | No color change = No Ab |  Ab ELISA Titration
                        
                            > Coat ELISA wells with Ag (can get commercial Ag of interest)> Add serial dilutions of patient's serum into wells
 > wash off unbound Ab
 > Add 2º Ab like Rabbit-Anti-Horse-Ig thats conjugated w enzyme, to the wells
 > wash off unbound Ab
 > add substrate
 Ab ELISA ~ MOA
                        
                            • Can run serum from multiple patients at once• Can determine titer by running serial dilutions of the serum
 |  | WB
                        
                                                                                    
                                                                                            |  Higher specificity than ELISA |  
                                                                                            |  |  
                                                                                            |  Designed to ID/Detect PROTEINS: |  
                                                                                            | 1. Detection of Antibody | if patients serum contains Ab against a specific protein in a complex protein mixture |  
                                                                                            | 2. ID specific protein antigen in mix | Use of a known reagent Ab to the protein of interest |  
                                                                                            |  |  
                                                                                            | MOA | This is a three-stage primary binding test |  
                                                                                            | Stage I | Electrophoresis of a protein mixture on gels so that each component is resolved into a single band |  
                                                                                            | Stage II | Blotting of these protein bands to an immobilizing nitrocellulose membrane |  
                                                                                            | Stage III | Visualization of transferred Ag by either directly or indirectly probing the membrane with Ab's |  
                                                                                            |  |  
                                                                                            |  WB Probing Methods |  
                                                                                            | Direct | Detection of the Protein Antigen |  
                                                                                            | Indirect | Detection of the Antibody |  DIRECT WB
                        
                            1. Separate out proteins by size and charge in the unknown antigen using gel electrophoresis
 2.Transfer molecules to secondary matrix
 3.Probe with enzyme-labeled known antibody to the antigen of interest
 4.Wash
 5. Add substrate and observe change (color or light)
 DIRECT WB ~ Bovine Spongiform Encephalopathy (BSE)
                        
                                                                                    
                                                                                            | Sample | Serum w Ag from pt. (separated by electroph.) |  
                                                                                            | _______________________ | Brain tissue |  
                                                                                            | Known | BSE specific Ab-tagged with an enzyme (reagent) |  
                                                                                            | Detects | BSE Prion protein Antigen (Unknown) |  
                                                                                            |  |  
                                                                                            |  RESULTS |  
                                                                                            | Positive Test | Banding that match the positive band pattern = Antigen present |  
                                                                                            | Negative Test | Banding that match the negative band pattern = No Antigen |  Direct WB Required for Dx of BSE! ~ Because: - The BSE Ag that causes a disease is a normal brain protein in Bovine that is malfunctioning because it is folded incorrectly
 - Since this is a normal protein in the Cow brain ~ There is NO IMMUNE RESPONSE that will generate
 
 >>> THUS: We have to test for the Ag since the Ab will never be produced
 Direct WB BSE Results
                        
                            - 3 brain preps from 3 suspect cow with brain proteins separated- Abnormal BSE-specific prion protein molecules can be detected using antibodies linked to an enzyme that results in a chemical reaction
 - For this test a monoclonal antibody was made that recognizes BSE-specific abnormal prion protein >>> This antibody is a reagent antibody (tagged with an enzyme).
 
 RESULTS
 Cow #3 has BSE-specific prion proteins in its brain.
 INDIRECT WB
                        
                                                                                    
                                                                                            |  USES |  
                                                                                            | ELISA Dx Confirmation | Feline Immunodeficiency Virus (FIV) |  
                                                                                            |  | Human Immunodeficiency Virus (HIV) |  
                                                                                            |  |  
                                                                                            | Sample | Patient serum w Ab (separated by |  
                                                                                            | Known | HIV Ag (from known HIV-infected cells) |  
                                                                                            | Detects (unknown reactant) | Ab spec. to HIV Ag |  
                                                                                            | Reagent | Anti-spp Ab conj. to enzyme |  
                                                                                            |  |  
                                                                                            |  INTERPRETATION |  
                                                                                            | Positive Test | Banding Pattern matches that of known positive = Ab present |  
                                                                                            | Negative Test | Banding Pattern matches that of known negative = No Ab |  INDIRECT WB MOA
                        
                            1. Separate out proteins by size and charge in the known antigen using gel electrophoresis2.Transfer molecules to secondary matrix
 3.Probe with patient's serum antibody
 4.Add enzyme-labeled antibody to patient's antibody
 5.Wash
 6. Add substrate and observe change (color or light)
 INDIRECT WB ~ FIV Confirmation
                        
                                                                                    
                                                                                            | Source for Ag | Proteins from FIV-infected cells (separated out by electrophoresis) |  
                                                                                            | Sample with unknown Ab | Cat's serum w/ Ab |  
                                                                                            | Detection Reagent | Anti-cat Ab conju. w enzyme |  Immunohistochemistry (IHC)IHC Test
                        
                                                                                    
                                                                                            |  - Always detects antigen |  
                                                                                            |  - Horseradish peroxidase (brown color) |  
                                                                                            |  - (-) Controls = irrelevant Ab OR normal tissue section |  
                                                                                            |  |  
                                                                                            | Sample | Thin tissue section |  
                                                                                            | Known ~ 1º reagent | 1º Reagent Antibody ~ probes Ag |  
                                                                                            | Detects (unknown) | Antigen in the Tissue sect. |  
                                                                                            | 2º Detection reagent | 2º Detection Ab conj. ~ spec. for 1º Ab |  
                                                                                            |  |  
                                                                                            |  CONTROLS |  
                                                                                            |  Positive Control |  
                                                                                            | 1º Reagent | 1º Reagent Ab ~ spec. for tissue Ag |  
                                                                                            | Positive Result | Brown in color = Ag is present |  
                                                                                            |  |  
                                                                                            |  Negative Control |  
                                                                                            | 1º Reagent | 1º Reagent Ab ~ spec. for tissue Ag NOT IN SAMPLE |  
                                                                                            | Negative Result | No color change = No Ag |  IHC Negative Control
                        
                                                                                    
                                                                                            |  USES |  
                                                                                            | Detection of mammary tumor Ag* | Use of an irrelevant rabbit mAb spec. to tumor Ag |  
                                                                                            | Detection of Brucella Melitensis |  IHC ~ Brucella Melitensis
                        
                                                                                    
                                                                                            | Sample | Histo section of a Goat's tissue from the Prepuce of the Penis and the Seminal Vesicular Gland |  
                                                                                            | 1º Reagent Ab | mAb spec. to B. melitensis Ag |  
                                                                                            | 2º Detection Ab | 2º mAb spec. to 1º Ab |  
                                                                                            |  |  
                                                                                            |  RESULTS |  
                                                                                            | Positive Test | Observed brown color when compared to controls = Ag present |  
                                                                                            | Negative Test | No color change from controls = No Ag |  B. Melitensis IHC Results
                        
                            Top: Mucosal epithelium of the Prepuce of the PenisBottom: Seminal Vesicular Gland epithelia
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