\documentclass[10pt,a4paper]{article} % Packages \usepackage{fancyhdr} % For header and footer \usepackage{multicol} % Allows multicols in tables \usepackage{tabularx} % Intelligent column widths \usepackage{tabulary} % Used in header and footer \usepackage{hhline} % Border under tables \usepackage{graphicx} % For images \usepackage{xcolor} % For hex colours %\usepackage[utf8x]{inputenc} % For unicode character support \usepackage[T1]{fontenc} % Without this we get weird character replacements \usepackage{colortbl} % For coloured tables \usepackage{setspace} % For line height \usepackage{lastpage} % Needed for total page number \usepackage{seqsplit} % Splits long words. %\usepackage{opensans} % Can't make this work so far. Shame. Would be lovely. \usepackage[normalem]{ulem} % For underlining links % Most of the following are not required for the majority % of cheat sheets but are needed for some symbol support. \usepackage{amsmath} % Symbols \usepackage{MnSymbol} % Symbols \usepackage{wasysym} % Symbols %\usepackage[english,german,french,spanish,italian]{babel} % Languages % Document Info \author{Molly} \pdfinfo{ /Title (3-2-effects-of-radiation-on-dna-and-chromosomes.pdf) /Creator (Cheatography) /Author (Molly) /Subject (3.2 Effects of Radiation on DNA and Chromosomes Cheat Sheet) } % Lengths and widths \addtolength{\textwidth}{6cm} \addtolength{\textheight}{-1cm} \addtolength{\hoffset}{-3cm} \addtolength{\voffset}{-2cm} \setlength{\tabcolsep}{0.2cm} % Space between columns \setlength{\headsep}{-12pt} % Reduce space between header and content \setlength{\headheight}{85pt} % If less, LaTeX automatically increases it \renewcommand{\footrulewidth}{0pt} % Remove footer line \renewcommand{\headrulewidth}{0pt} % Remove header line \renewcommand{\seqinsert}{\ifmmode\allowbreak\else\-\fi} % Hyphens in seqsplit % This two commands together give roughly % the right line height in the tables \renewcommand{\arraystretch}{1.3} \onehalfspacing % Commands \newcommand{\SetRowColor}[1]{\noalign{\gdef\RowColorName{#1}}\rowcolor{\RowColorName}} % Shortcut for row colour \newcommand{\mymulticolumn}[3]{\multicolumn{#1}{>{\columncolor{\RowColorName}}#2}{#3}} % For coloured multi-cols \newcolumntype{x}[1]{>{\raggedright}p{#1}} % New column types for ragged-right paragraph columns \newcommand{\tn}{\tabularnewline} % Required as custom column type in use % Font and Colours \definecolor{HeadBackground}{HTML}{333333} \definecolor{FootBackground}{HTML}{666666} \definecolor{TextColor}{HTML}{333333} \definecolor{DarkBackground}{HTML}{A3A3A3} \definecolor{LightBackground}{HTML}{F3F3F3} \renewcommand{\familydefault}{\sfdefault} \color{TextColor} % Header and Footer \pagestyle{fancy} \fancyhead{} % Set header to blank \fancyfoot{} % Set footer to blank \fancyhead[L]{ \noindent \begin{multicols}{3} \begin{tabulary}{5.8cm}{C} \SetRowColor{DarkBackground} \vspace{-7pt} {\parbox{\dimexpr\textwidth-2\fboxsep\relax}{\noindent \hspace*{-6pt}\includegraphics[width=5.8cm]{/web/www.cheatography.com/public/images/cheatography_logo.pdf}} } \end{tabulary} \columnbreak \begin{tabulary}{11cm}{L} \vspace{-2pt}\large{\bf{\textcolor{DarkBackground}{\textrm{3.2 Effects of Radiation on DNA and Chromosomes Cheat Sheet}}}} \\ \normalsize{by \textcolor{DarkBackground}{Molly} via \textcolor{DarkBackground}{\uline{cheatography.com/30516/cs/9531/}}} \end{tabulary} \end{multicols}} \fancyfoot[L]{ \footnotesize \noindent \begin{multicols}{3} \begin{tabulary}{5.8cm}{LL} \SetRowColor{FootBackground} \mymulticolumn{2}{p{5.377cm}}{\bf\textcolor{white}{Cheatographer}} \\ \vspace{-2pt}Molly \\ \uline{cheatography.com/molly} \\ \end{tabulary} \vfill \columnbreak \begin{tabulary}{5.8cm}{L} \SetRowColor{FootBackground} \mymulticolumn{1}{p{5.377cm}}{\bf\textcolor{white}{Cheat Sheet}} \\ \vspace{-2pt}Not Yet Published.\\ Updated 19th October, 2016.\\ Page {\thepage} of \pageref{LastPage}. \end{tabulary} \vfill \columnbreak \begin{tabulary}{5.8cm}{L} \SetRowColor{FootBackground} \mymulticolumn{1}{p{5.377cm}}{\bf\textcolor{white}{Sponsor}} \\ \SetRowColor{white} \vspace{-5pt} %\includegraphics[width=48px,height=48px]{dave.jpeg} Measure your website readability!\\ www.readability-score.com \end{tabulary} \end{multicols}} \begin{document} \raggedright \raggedcolumns % Set font size to small. Switch to any value % from this page to resize cheat sheet text: % www.emerson.emory.edu/services/latex/latex_169.html \footnotesize % Small font. \begin{multicols*}{3} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Structure of DNA}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Two separate long {\bf{polymer chains}} wound around each other in the form of a {\bf{double helix}}} \tn % Row Count 2 (+ 2) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{The polymer chains are formed from sugar units and phosphate units that alternate with each other to make up the strands.} \tn % Row Count 5 (+ 3) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The two strands are wound around each other in opposite polarity and are held together by means of hydrogen bonding which occurs between pairs of bases that are attached to the sugar units of each strand.} \tn % Row Count 10 (+ 5) % Row 3 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{{\bf{Adenine}} on one strand can only pair with {\bf{thymine}} on the opposite strand, and {\bf{guanine}} on one strand can only pair with {\bf{cytosine}} on the opposite strand.} \tn % Row Count 14 (+ 4) % Row 4 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The two sugar- phosphate strands are wound around each other, making one full revolution every 3.4 nm (1nm = 10−9 m) in a right-handed spiral, which is wound around a central axis, such that a major grove and a minor grove are formed.} \tn % Row Count 19 (+ 5) % Row 5 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{The base pairs are spaced at intervals of 0.34 nm along the chain.} \tn % Row Count 21 (+ 2) % Row 6 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The result is an extremely long, thin molecule which reaches up to 1 mm in length and diameter of 2 nm.} \tn % Row Count 24 (+ 3) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{5.377cm}}{\bf\textcolor{white}{DNA ladder or molecule}} \tn \SetRowColor{LightBackground} \mymulticolumn{1}{p{5.377cm}}{\vspace{1px}\centerline{\includegraphics[width=5.1cm]{/web/www.cheatography.com/public/uploads/molly_1476879916_Capture.PNG}}} \tn \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Base Sequence and the Genetic Code}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The precise sequence of bases along the DNA molecule forms the code that carries the genetic information.} \tn % Row Count 3 (+ 3) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{The complementary base pairing endows the molecule with the ability to provide an exact copy of itself.} \tn % Row Count 6 (+ 3) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{DNA Replication}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{{\bf{Replication}} is not continuous but occurs at a definite part or phase of the cell division cycle, {\bf{the S phase}}.} \tn % Row Count 3 (+ 3) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{The two (old) strands of the DNA molecule are separated and two (new) strands are made with the exact complimentary base pairing along the two old strands so that two new DNA double helix molecules are formed each made up of one old and one new strand.} \tn % Row Count 9 (+ 6) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The two new DNA molecules eventually separate to two daughter cells so that the process of replication copies the genetic information in the mother cell and permits its transmission to two identical daughter cells.} \tn % Row Count 14 (+ 5) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{5.377cm}}{\bf\textcolor{white}{DNA replication}} \tn \SetRowColor{LightBackground} \mymulticolumn{1}{p{5.377cm}}{\vspace{1px}\centerline{\includegraphics[width=5.1cm]{/web/www.cheatography.com/public/uploads/molly_1476880185_Capture.PNG}}} \tn \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Target for Radiation Damage}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{In simplistic terms, {\bf{the living cell consists of}} an outer cell membrane, a cytoplasm, a nuclear envelope or membrane and a nucleus. The nucleus contains the deoxyribonucleic acid (DNA), which is the backbone of the chromosomes and carries all the information that determines the nature of the cell and regulates its operation.} \tn % Row Count 7 (+ 7) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{The sensitive site for radiation-induced cell death is believed to be located in the nucleus as opposed to the cytoplasm.} \tn % Row Count 10 (+ 3) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Single Strand Breaks}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The number is linearly related to the dose over a wide range (\textless{}0.2Gy to 60,000Gy).} \tn % Row Count 2 (+ 2) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Most are induced via the OH* radicals of water.} \tn % Row Count 3 (+ 1) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The number induced in oxygenated cells is three to four times that found in cells irradiated under hypoxic conditions.} \tn % Row Count 6 (+ 3) % Row 3 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Repair is very rapid and efficient and involves the excision of the strand containing the defective piece of DNA.} \tn % Row Count 9 (+ 3) % Row 4 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The complementary (undamaged) single strand is used as the template for the resynthesis of a new length of DNA.} \tn % Row Count 12 (+ 3) % Row 5 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{SSBs are much less important than DSBs in determining cell death.} \tn % Row Count 14 (+ 2) % Row 6 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Non-repaired SSBs can take part in the formation of DSBs} \tn % Row Count 16 (+ 2) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{5.377cm}}{\bf\textcolor{white}{Single Strand Breaks}} \tn \SetRowColor{LightBackground} \mymulticolumn{1}{p{5.377cm}}{\vspace{1px}\centerline{\includegraphics[width=5.1cm]{/web/www.cheatography.com/public/uploads/molly_1476880523_Capture.PNG}}} \tn \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Double Strand Breaks}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{{\bf{Double strand breaks}} of DNA, if not accurately repaired, {\bf{can lead to cell death}} or the birth of an {\bf{abnormal (cancerous) cell.}}} \tn % Row Count 3 (+ 3) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{The relationship between the number induced and radiation dose is believed to be 'linear quadratic' (P = αD + βD2).} \tn % Row Count 6 (+ 3) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{They are produced by the passage of one ionising event (αD) or as a result of two independent SSBs (βD2).} \tn % Row Count 9 (+ 3) % Row 3 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{They were initially thought to be unrepairable and this idea formed the basis for the long-standing view that DSBs were the lethal radiation-induced lesions.} \tn % Row Count 13 (+ 4) % Row 4 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Recent measurements show that many can be repaired or at least rejoined.} \tn % Row Count 15 (+ 2) % Row 5 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{These methods can only detect whether the free ends of a broken DNA molecule have joined together; they cannot indicate whether the original base pairing of the genetic code has been re-established.} \tn % Row Count 19 (+ 4) % Row 6 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The techniques cannot detect the presence of 'mis-repair' or 'error prone' repair which might be a cause of significant genetic damage.} \tn % Row Count 22 (+ 3) % Row 7 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{In the absence of a perfect template, it is difficult to see how repair can be achieved without some erroneous base-pair acquisition or loss.} \tn % Row Count 25 (+ 3) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{5.377cm}}{\bf\textcolor{white}{Double strand break}} \tn \SetRowColor{LightBackground} \mymulticolumn{1}{p{5.377cm}}{\vspace{1px}\centerline{\includegraphics[width=5.1cm]{/web/www.cheatography.com/public/uploads/molly_1476880646_Capture.PNG}}} \tn \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{DNA Base Damage}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Damage to bases of DNA was first recognised in bacteria.} \tn % Row Count 2 (+ 2) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Highly sensitive tests can now measure such lesions, especially thymine damage.} \tn % Row Count 4 (+ 2) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The number is linearly related to dose.} \tn % Row Count 5 (+ 1) % Row 3 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{They arise via the OH* radicals of water.} \tn % Row Count 6 (+ 1) % Row 4 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Thymine damage is more frequent in mammalian cells than SSBs however, there is no direct evidence showing that this forms a biologically important lesion.} \tn % Row Count 10 (+ 4) % Row 5 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Excision repair mechanism is responsible for rapid and efficient removal of damaged bases.} \tn % Row Count 12 (+ 2) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{5.377cm}}{\bf\textcolor{white}{DNA Base Damage}} \tn \SetRowColor{LightBackground} \mymulticolumn{1}{p{5.377cm}}{\vspace{1px}\centerline{\includegraphics[width=5.1cm]{/web/www.cheatography.com/public/uploads/molly_1476880751_Capture.PNG}}} \tn \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Other Mechanisms of DNA Damage}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{{\bf{Normal metabolic processes}}:} \tn % Row Count 1 (+ 1) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Free radical generation during metabolism} \tn % Row Count 2 (+ 1) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{DNA replication may be associated with transcription errors, repaired through a number of pathways} \tn % Row Count 4 (+ 2) % Row 3 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{{\bf{External sources}}:} \tn % Row Count 5 (+ 1) % Row 4 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Non-ionising radiation, such as UV electromagnetic radiation, can cause crosslinks between adjacent bases} \tn % Row Count 8 (+ 3) % Row 5 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Chemicals may react with DNA, causing adducts (additions to the DNA molecule that disrupt its structure) or crosslinks} \tn % Row Count 11 (+ 3) % Row 6 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Heat can cause breakage of DNA molecules} \tn % Row Count 12 (+ 1) % Row 7 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{{\bf{Base mismatch}}, which often occurs during DNA replication, is repaired with {\bf{mismatch repair proteins (MMR)}}. {\bf{Bulky DNA lesions or adducts}} are repaired by {\bf{nucleotide excision repair (NER)}}. Other processes to remove specific adducts are also present.} \tn % Row Count 18 (+ 6) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Summary of Assays for DNA Damage and Repair}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{DNA damage is assessed by: Comet Assay, Pulsed Field Gel Electrophoresis (PFGE), or Micronucleus Assay.} \tn % Row Count 3 (+ 3) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Cells that are more sensitive to radiation will show increased fragmentation of DNA, detectable with pulsed field gel electrophoresis or the comet assay. The micronucleus assay is capable of detecting DNA breaks by measuring the formation of micronuclei, which occur when DNA fragments are not aligned on the mitotic spindle.} \tn % Row Count 10 (+ 7) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{DNA repair can also be assessed using these methods. By allowing cells to survive for some time after radiation exposure, and comparing the fragmentation of DNA with cells immediately sacrificed, the amount of repair that occurs is quantifiable.} \tn % Row Count 15 (+ 5) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Comet Assay for DNA Damage/Repair}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{{\bf{Single-cell electrophoresis}}} \tn % Row Count 1 (+ 1) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Single cells are placed on a glass slide, held in suspension by an agarose gel. They are then exposed to radiation (or some other stimulus) before being lysed by an aqueous solution. The DNA is unable to escape the agarose gel, whereas the remainder of the cell is removed by the solution. The DNA occupies this space (the {\bf{nucleoid}}).} \tn % Row Count 8 (+ 7) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The slide is then immersed in an electrophoresis solution and has a current applied. Undamaged DNA remains trapped in the nucleoid, whereas damaged DNA is small enough to move through the agarose gel. Once the current has been applied for a specified time, the slide is stained for DNA molecules and visualised under a specialised microscope, often with image analysis software to calculate the presence of DNA damage.} \tn % Row Count 17 (+ 9) % Row 3 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{The term {\bf{comet assay}} is derived from the appearance of the nucleoid after electrophoresis has taken place. The undamaged DNA remains in the nucleoid in a sphere, the 'head' of the comet. The damaged DNA travels towards the anode, forming the 'tail' of the comet.} \tn % Row Count 23 (+ 6) % Row 4 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Detects differences in DNA damage (and repair) at a single cell level and is commonly used for biopsy specimens from tumours.} \tn % Row Count 26 (+ 3) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Pulsed Field Gel Electrophoresis (Assay)}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{{\emph{Gel Electrophoresis}} works because fragments of DNA have a negative charge, causing them to migrate towards the anode if a charge is run through the gel containing the DNA molecules.} \tn % Row Count 4 (+ 4) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{This approach is limited due to poor sensitivity to large (over 50 kbp: kilo-base pairs) fragments of DNA, which tend to move at the same rate through the gel.} \tn % Row Count 8 (+ 4) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{{\bf{Pulsed field gel electrophoresis}} involves three pairs of electrodes, aligned at 0°, 120°, and -120° with respect to the direction of travel. Charge is run through the sample for 10 - 60 seconds between a pair of electrodes, with an equal time spent on each group for a net forward migration (see Figure 2.10). Larger fragments take longer to realign themselves to the changing voltage, and therefore there is increased separation of DNA fragments.} \tn % Row Count 18 (+ 10) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Micronucleus Assay}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{A {\bf{micronucleus}} is the aberrant formation of a third, small nucleus during a mitotic division.} \tn % Row Count 2 (+ 2) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{These micronuclei form when there is a piece of DNA not attached to the mitotic spindle (due to double strand breaks).} \tn % Row Count 5 (+ 3) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{For this experiment, dividing cells are exposed to a stimuli that causes double strand breaks. Cytokinesis is inhibited by cytochalasin-B. The cells are then stained and examined under a microscope; the number of cells that contain micronuclei are counted. About 1,000 cells need to be counted for an accurate result.} \tn % Row Count 12 (+ 7) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{DNA Repair}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{{\bf{Sensing of DNA Damage}}: Several genes are involved in the response to ionising radiation. The actual genes involved depend on the damage inflicted as well as the stage in the cell cycle.} \tn % Row Count 4 (+ 4) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{{\bf{Basics of DNA Repair}}: For therapeutic radiation, the repair of double strand breaks (DSBs) is the most important as these seem to be the lesions that lead to cell death.} \tn % Row Count 8 (+ 4) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{DSBs are difficult problems for the cell to repair. The two ends may dissociate, although the histone molecules may provide some structural support. If several breaks are formed in a cell, then the cell may unite the strands incorrectly. The final problem is that there may not be an appropriate template to repair the damage, particularly in G1 and early S phases.} \tn % Row Count 16 (+ 8) % Row 3 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{DSB repair is performed by two cellular processes: {\bf{Homologous Recombination (HR)}} and {\bf{Non-Homologous End Joining (NHEJ)}}} \tn % Row Count 19 (+ 3) % Row 4 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Repair by {\bf{NHEJ}} operates throughout the cell cycle but dominates in G1/S-phases. The process is error prone because it does not rely on sequence homology.} \tn % Row Count 23 (+ 4) % Row 5 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{{\bf{HR}} utilises sequence homology with an undamaged copy of the broken region and hence can only operate in late S- or G2- phases of the cell cycle.} \tn % Row Count 26 (+ 3) % Row 6 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Other DNA repair mechanisms such as base excision repair (BER), mismatch repair (MR) and nucleotide excision repair (NER) respond to damage such a base oxidation, alkylation, and strand intercalation.} \tn % Row Count 30 (+ 4) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Homologous Recombination (HR)}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The ideal repair pathway, but it requires an undamaged copy of the DNA to function (and replace the damaged section).} \tn % Row Count 3 (+ 3) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{This means that homologous recombination {\bf{only occurs after duplication of the DNA has occurred in preparation for mitosis.}}} \tn % Row Count 6 (+ 3) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The first step in HR is the detection of the DSB. This is performed by the ATM/ATR gene products, as well as the MRN complex. When activated, these proteins signal numerous other molecules (including p53), inducing a cell cycle arrest. The ends of the damaged DNA strand are processed and damaged bases are removed.} \tn % Row Count 13 (+ 7) % Row 3 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{The resulting repair process attracts the sister chromatid, unwinds it and uses the undamaged DNA strand of the sister chromatid to fill in gap left by the double strand break. Then there is DNA synthesis of the missing nucleotides on the undamaged templates and ligation. This creates a complex strand crossover between the damaged and undamaged strands known as a {\bf{Holliday junction}}, which is finally resolved before the repair process is complete.} \tn % Row Count 23 (+ 10) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Non-Homologous End Joining (NHEJ)}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Used in all phases of the cell cycle, as it does not require a sister chromatid to function.} \tn % Row Count 2 (+ 2) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Not as accurate as HR as it does not use a template for repair. It is still a relatively accurate repair pathway, as it is responsible for DNA damage repair in most cells at some time.} \tn % Row Count 6 (+ 4) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{NHEJ also starts with recognition of the strand break and signaling to the cell that damage has occurred. PRKDC plays an important role in attracting repair proteins as well as preventing the ends from dissociating.} \tn % Row Count 11 (+ 5) % Row 3 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{As a first step, each end of the double strand break must be 'processed', removing damaged bases and adding bases if necessary (this is where the error comes in).} \tn % Row Count 15 (+ 4) % Row 4 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The second step involves the ligation of the two ends.} \tn % Row Count 17 (+ 2) % Row 5 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Each side of the double strand break is recognised by XRCC5 and XRCC6 (Ku-70 / Ku-80). These attract PRKDC to the break, which bridges the gap and notifies the cell that damage has occurred through phosphorylation of numerous signalling molecules.} \tn % Row Count 22 (+ 5) % Row 6 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{A collection of NHEJ related proteins then processes each end before ligating the ends together.} \tn % Row Count 24 (+ 2) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{5.377cm}}{\bf\textcolor{white}{NHEJ and HR}} \tn \SetRowColor{LightBackground} \mymulticolumn{1}{p{5.377cm}}{\vspace{1px}\centerline{\includegraphics[width=5.1cm]{/web/www.cheatography.com/public/uploads/}}} \tn \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{BER / SSBR}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{{\bf{Base Excision Repair (BER) / Single Strand Break Repair (SSBR)}}} \tn % Row Count 2 (+ 2) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Perhaps the most straightforward repair pathway.} \tn % Row Count 3 (+ 1) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{If a base is altered by any means, it causes an abnormality in the shape of the DNA helix; this can be detected by glycosylase which removes (excises) the damaged base.} \tn % Row Count 7 (+ 4) % Row 3 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{The DNA is then 'nicked' by the AP endonuclease enzyme; the sugar/phosphate backbone of the affected base is also removed by APE1, leaving a single strand break.} \tn % Row Count 11 (+ 4) % Row 4 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The alternative method of arriving at this situation is when radiation induces a SSB, which is then recognised by the PARP protein. The ends are processed (cleaned by PNK) to leave a 'clean' single strand break.} \tn % Row Count 16 (+ 5) % Row 5 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{The end process of both methods is a gap in one strand of the DNA helix, which must be repaired. Short patching is performed by POLB (polymerase beta), which inserts the correct base (replaces damaged base), and LIG3 which unites the strand.} \tn % Row Count 21 (+ 5) % Row 6 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Long patching is more complicated, involving the removal of a section of the DNA around the single break and reconstruction of the region by polymerase and ligation of the ends.} \tn % Row Count 25 (+ 4) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Nucleotide Excision Repair (NER)}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Used when a stretch of DNA has been damaged.} \tn % Row Count 1 (+ 1) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Particularly important in the response to ultraviolet radiation, which can cause bulky DNA adducts (not typical of ionising radiation).} \tn % Row Count 4 (+ 3) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{NER is carried out by an array of proteins. The damaged strand is detected, and incisions made up and downstream of the lesion by 5 - 10 bases. The entire section is removed and the gap in the DNA is then copied from the undamaged side of the DNA strand and ligated onto the free ends.} \tn % Row Count 10 (+ 6) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Mismatch Repair (MMR)}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Occurs during DNA replication, and ensures highly accurate translation of DNA (important in carcinogenesis).} \tn % Row Count 3 (+ 3) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{If an incorrect base is inserted by DNA polymerase, the MMR proteins are able to detect the abnormal shape of the DNA helix (incorrect pairing of bases) and excise the incorrect base.} \tn % Row Count 7 (+ 4) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{These abnormal bases are excised with a small margin of bases on either side. The gap is then filled by DNA polymerase and the ends ligated - repair of the lesion.} \tn % Row Count 11 (+ 4) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{DNA in Chromosomes}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{{\bf{Chromosomes}} are thread-like structures of DNA and protein.} \tn % Row Count 2 (+ 2) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{The basic DNA molecule is associated with beads or discs of proteins ({\bf{histones}}) around which the DNA is wrapped and the protein discs are packed to form a fibre that can be seen under the electron microscope. This fibre is looped, folded and branched in an irregular fashion to form the chromosomes that are visible under the light microscope during metaphase.} \tn % Row Count 10 (+ 8) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{A single continuous DNA molecule extends from one end of the chromosome to the other. Somewhere along the length of chromosomes is a region that does not stain, called the {\bf{centromere.}}} \tn % Row Count 14 (+ 4) % Row 3 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{The chromosome therefore comprises two strands (the chromatids) held together at the centromere region.} \tn % Row Count 17 (+ 3) % Row 4 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{In cell division, the centromere divides the chromosome and each daughter cell receives one chromatid from each chromosome. The presence of a centromere is essential, therefore, for the migration of chromosomal pieces to the poles of the cell.} \tn % Row Count 22 (+ 5) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Chromosome Damage}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The arms of chromosomes are subject to breakage.} \tn % Row Count 1 (+ 1) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Exposure to ionising radiation increases the frequency of breaks, these occur when the radiation passes through the chromosomal thread. The thread breaks into parts, but broken ends of chromosomes are 'sticky', and because of this, the parts frequently stick together again. This process of healing, called {\bf{restitution}}, occurs following most chromosome breaks, probably in more than 90 percent of them.} \tn % Row Count 10 (+ 9) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Restituted chromosomes either lose no genetic matter or so little that cells bearing them function normally enough to escape detection. Occasionally, however, restitution does not follow a break resulting in chromosome aberrations. Breakage of chromosomes without restitution is lethal if cell division occurs after the chromosome break. Cell death, as a result of chromosome breakage, is known as {\bf{'mitotic death'}}. It is a principal mechanism of cell killing in radiotherapy.} \tn % Row Count 20 (+ 10) % Row 3 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{{\bf{Chromosome damage}} arises when a single chromosome is broken before the material has been duplicated in S phase.} \tn % Row Count 23 (+ 3) % Row 4 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{When the chromatin generates an identical strand, it replicates the break caused by the radiation. Hence, a chromosome aberration is visible at mitosis, as there are identical breaks in a pair of strands.} \tn % Row Count 28 (+ 5) % Row 5 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{{\bf{Chromatid damage}} results from damage to one arm of the duplicated chromosome, with no damage to the other.} \tn % Row Count 31 (+ 3) \end{tabularx} \par\addvspace{1.3em} \vfill \columnbreak \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Chromosome Damage (cont)}} \tn % Row 6 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The radiation dose is given later in interphase, after DNA has been doubled, the arms are separated, and the radiation only breaks one chromatid. This leads to chromatid abberations.} \tn % Row Count 4 (+ 4) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Dicentric Chromosome}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{An example of a lethal aberration} \tn % Row Count 1 (+ 1) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Produced when breaks occur in two chromosomes within the same nucleus.} \tn % Row Count 3 (+ 2) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{If the 'broken ends' are within close proximity, they may rejoin to produce a dicentric chromosome with an accompanying fragment.} \tn % Row Count 6 (+ 3) % Row 3 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{A {\bf{ring}} is formed when both ends are lost from the same chromosome. The chromosome then attaches its new ends together, leading to formation of a ring.} \tn % Row Count 10 (+ 4) % Row 4 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{An {\bf{anaphase bridge}} is formed when a duplicated chromosome loses both ends of a paired arm. The arms then unite, and when the cell tries to divide at mitosis it is unable to separate the fused arms.} \tn % Row Count 15 (+ 5) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{5.377cm}}{\bf\textcolor{white}{Dicentric Chromosome}} \tn \SetRowColor{LightBackground} \mymulticolumn{1}{p{5.377cm}}{\vspace{1px}\centerline{\includegraphics[width=5.1cm]{/web/www.cheatography.com/public/uploads/molly_1476884387_Capture.PNG}}} \tn \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Assays for Chromosome Damage}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{{\bf{Conventional Smear}}: the cells must be specially prepared to view the chromosomes:} \tn % Row Count 2 (+ 2) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Ideally a highly mitotic population is cultured \{\{nl\}\}Cells are arrested in metaphase \{\{nl\}\}The cells are treated to cause swelling of the nucleus and spreading out of the chromosomes \{\{nl\}\}The cells are plated on a slide and left to dry \{\{nl\}\}The slide is stained for DNA molecules} \tn % Row Count 8 (+ 6) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{This method allows chromosomes to be visualised under light microscopy, where they can be counted and observed for {\bf{abnormalities}}. Abnormalities such as translocations are often difficult to visualise with this method, however lethal chromosome abnormalities are typically visible.} \tn % Row Count 14 (+ 6) % Row 3 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{{\bf{In Vivo Lymphocyte Assay}}: Peripheral lymphocytes can be harvested after radiation exposure. They can be simulated to divide in culture (eg. with phytohaemagluttinin), and then arrested in metaphase. Chromosome smears can then be performed to judge the number of abnormalities present.} \tn % Row Count 20 (+ 6) % Row 4 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{{\bf{In-Situ Hybridisation}}: involves a a variety of techniques that have a similar process:} \tn % Row Count 22 (+ 2) % Row 5 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{A probe is used to bind to a specific sequence of DNA, RNA or protein} \tn % Row Count 24 (+ 2) % Row 6 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{If required, an antibody directed against the probe is added to the cell. This antibody is capable of creating a visible effect when bound to the probe.} \tn % Row Count 28 (+ 4) % Row 7 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{{\bf{Silver In-Situ Hybridisation (SISH)}} is more commonly used for gene number counting.} \tn % Row Count 30 (+ 2) \end{tabularx} \par\addvspace{1.3em} \vfill \columnbreak \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Assays for Chromosome Damage (cont)}} \tn % Row 8 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The antibody used in SISH causes silver atoms to collect in the region of the gene. The number of genes can then be counted using a normal light microscope (the silver appears as a dark spot).} \tn % Row Count 4 (+ 4) % Row 9 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{{\bf{Fluorescense In-Situ Hybridisation (FISH)}}: DNA strands can be targeted by specific probes. These can either be 'chromosome painting', which cause each chromosome to fluoresce a difference colour; or can be directed against specific genes.} \tn % Row Count 9 (+ 5) % Row 10 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Chromosome painting is particularly useful at detecting translocations, as the translocated arm will be a different colour to the host chromosome. FISH requires a specific microscope which can cause the molecules to fluoresce.} \tn % Row Count 14 (+ 5) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Cytogenetic Dosimetry}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The detection of the presence or absence of dicentric chromosomes in cells, particularly in lymphocytes, is a method routinely used to identify or exclude people who are suspected of being irradiated.} \tn % Row Count 4 (+ 4) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Situations can occur when either:} \tn % Row Count 5 (+ 1) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{1. the exposure registered on the personal monitor, such as a thermoluminescent dosimeter (TLD), does not appear to reflect dose received by the wearer} \tn % Row Count 9 (+ 4) % Row 3 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{2. the person having suspected overexposure was not wearing any type of physical dosimeter.} \tn % Row Count 11 (+ 2) % Row 4 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The dicentric chromosome is a sensitive and reliable indicator of dose in persons having recent radiation exposures because it:} \tn % Row Count 14 (+ 3) % Row 5 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{1. is easily identified;} \tn % Row Count 15 (+ 1) % Row 6 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{2.occurs with a low background frequency;} \tn % Row Count 16 (+ 1) % Row 7 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{3. is rarely observed following exposure to chemicals.} \tn % Row Count 18 (+ 2) % Row 8 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{{\bf{The Lymphocyte Culture System}}: To calibrate dose and effect, aliquots of whole blood from normal adults are exposed to 60Co γ radiation (or x-radiation) to doses 0.25 to 5.0 Gy (25 to 500 rads).} \tn % Row Count 22 (+ 4) % Row 9 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{The lymphocytes are incubated in culture medium at 37°C for sufficient time to allow a large proportion of the lymphocytes to complete one round of DNA synthesis (approximately 48 hours).} \tn % Row Count 26 (+ 4) % Row 10 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{The cells are then arrested (halted in the cell cycle) after division by the addition of an inhibitor and are then harvested, stained and examined under a microscope to determine the frequency of dicentric induction.} \tn % Row Count 31 (+ 5) \end{tabularx} \par\addvspace{1.3em} \vfill \columnbreak \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Cytogenetic Dosimetry (cont)}} \tn % Row 11 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Approximately 500 cells are examined although the actual number depends on the level of exposure and statistical certainty required.} \tn % Row Count 3 (+ 3) % Row 12 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{It has been found that the dose dependency for yield of dicentrics is adequately described by the linear-quadratic model, Y = αD + βD2 where Y is dicentric yield (dicentrics per cell), D is radiation dose, and α and β determine the relative importance of single and two hit events} \tn % Row Count 9 (+ 6) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Radiobiological Definition of Cell Death}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Cells are generally regarded as having been "killed" by radiation if they have {\bf{lost reproductive integrity}}, not by whether they physically survive in the population.} \tn % Row Count 4 (+ 4) % Row 1 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Loss of reproductive integrity can occur by apoptosis, necrosis, mitotic catastrophe or by induced senescence. Although all but the last of these mechanisms ultimately results in physical loss of the cell this may take a significant time to occur, e.g mitotic death may not happen until several divisions have taken place.} \tn % Row Count 11 (+ 7) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{{\bf{Apoptosis}} or programmed cell death (previously called interphase cell death) is a strong feature in embryological development and in lymphocyte turnover.} \tn % Row Count 15 (+ 4) % Row 3 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Apoptosis (which is non-inflammatory) can be identified by microscopy: shrinkage of cellular morphology, condensation of chromatin, nucleosome laddering indicating chromatin degradation, and cell membrane blebbing.} \tn % Row Count 20 (+ 5) % Row 4 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{Apoptosis occurs in particular cell types after low doses of irradiation e.g. lymphocytes, serous salivary gland cells, and certain cells in the stem cell zone in testis and intestinal crypts.} \tn % Row Count 24 (+ 4) % Row 5 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{{\bf{Mitotic Death}} occurs if a cell proceeds through mitosis without proper alignment of chromosomes on the metaphase plate, the division of the cell may lead to aneuploidy in both daughter cells. The cells die due to loss (or gain) of significant genetic material} \tn % Row Count 30 (+ 6) \end{tabularx} \par\addvspace{1.3em} \vfill \columnbreak \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Radiobiological Definition of Cell Death (cont)}} \tn % Row 6 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{This may be due to loss of genes that allow mitosis to occur or due to inability of the cell to pass on genetic material once the catastrophe has occurred.} \tn % Row Count 4 (+ 4) % Row 7 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{{\bf{Mitotic death is the principal mechanism of cell killing in radiotherapy}}} \tn % Row Count 6 (+ 2) % Row 8 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{A rapid fall of cell numbers after irradiation is likely to be due to apoptosis but may also occur by mitotic death in rapidly proliferating populations.} \tn % Row Count 10 (+ 4) % Row 9 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Whether apoptosis reflects overall cell killing in tumour cell inactivation by radiation is currently unresolved and may only be the case for certain types of tumour cells.} \tn % Row Count 14 (+ 4) % Row 10 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{{\bf{Necrosis}} is typified by cell edema, poor staining of nuclei, increase of membrane permeability, shut down of cell metabolism, and an accompanying inflammatory response. Cellular necrosis generally occurs after high radiation doses.} \tn % Row Count 19 (+ 5) % Row 11 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{{\bf{Bystander Effect}}: The induction of biologic effects in cells that are not directly traversed by a charged particle, but are in proximity to cells that are.} \tn % Row Count 23 (+ 4) % Row 12 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{{\bf{Heritable biologic effects do not require direct damage to DNA!}}} \tn % Row Count 25 (+ 2) % Row 13 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{Experiments indicate that irradiated cells secrete a molecule (capable of killing cells) into the medium that can transferred onto unirradiated cells.} \tn % Row Count 28 (+ 3) % Row 14 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{{\bf{Senescence}} or replicative senesence (RS) is a programmed cellular stress response to the accumulation of damage to a cell.} \tn % Row Count 31 (+ 3) \end{tabularx} \par\addvspace{1.3em} \vfill \columnbreak \begin{tabularx}{5.377cm}{p{0.4977 cm} p{0.4977 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Radiobiological Definition of Cell Death (cont)}} \tn % Row 15 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{It is observed when cells stop dividing, and this differs from the behaviour of stem cells and tumour cells which do not show these limitations. Senescent cells are somewhat edematous and show poor cell-cell contact, increased polyploidy, decreased ability to express heat shock proteins, and shortening of {\bf{telomeres}} (caps at the end of chromosomes).} \tn % Row Count 8 (+ 8) % Row 16 \SetRowColor{white} \mymulticolumn{2}{x{5.377cm}}{It silences genes necessary for the transition from G1 to S phase of the cell cycle.} \tn % Row Count 10 (+ 2) % Row 17 \SetRowColor{LightBackground} \mymulticolumn{2}{x{5.377cm}}{{\bf{Autophagic Cell Death}}: the cell consumes itself. It is thought to be induced by radiotherapy and chemotherapy.} \tn % Row Count 13 (+ 3) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} % That's all folks \end{multicols*} \end{document}