\documentclass[10pt,a4paper]{article} % Packages \usepackage{fancyhdr} % For header and footer \usepackage{multicol} % Allows multicols in tables \usepackage{tabularx} % Intelligent column widths \usepackage{tabulary} % Used in header and footer \usepackage{hhline} % Border under tables \usepackage{graphicx} % For images \usepackage{xcolor} % For hex colours %\usepackage[utf8x]{inputenc} % For unicode character support \usepackage[T1]{fontenc} % Without this we get weird character replacements \usepackage{colortbl} % For coloured tables \usepackage{setspace} % For line height \usepackage{lastpage} % Needed for total page number \usepackage{seqsplit} % Splits long words. %\usepackage{opensans} % Can't make this work so far. Shame. Would be lovely. \usepackage[normalem]{ulem} % For underlining links % Most of the following are not required for the majority % of cheat sheets but are needed for some symbol support. \usepackage{amsmath} % Symbols \usepackage{MnSymbol} % Symbols \usepackage{wasysym} % Symbols %\usepackage[english,german,french,spanish,italian]{babel} % Languages % Document Info \author{mjb} \pdfinfo{ /Title (enzymes.pdf) /Creator (Cheatography) /Author (mjb) /Subject (Enzymes Cheat Sheet) } % Lengths and widths \addtolength{\textwidth}{6cm} \addtolength{\textheight}{-1cm} \addtolength{\hoffset}{-3cm} \addtolength{\voffset}{-2cm} \setlength{\tabcolsep}{0.2cm} % Space between columns \setlength{\headsep}{-12pt} % Reduce space between header and content \setlength{\headheight}{85pt} % If less, LaTeX automatically increases it \renewcommand{\footrulewidth}{0pt} % Remove footer line \renewcommand{\headrulewidth}{0pt} % Remove header line \renewcommand{\seqinsert}{\ifmmode\allowbreak\else\-\fi} % Hyphens in seqsplit % This two commands together give roughly % the right line height in the tables \renewcommand{\arraystretch}{1.3} \onehalfspacing % Commands \newcommand{\SetRowColor}[1]{\noalign{\gdef\RowColorName{#1}}\rowcolor{\RowColorName}} % Shortcut for row colour \newcommand{\mymulticolumn}[3]{\multicolumn{#1}{>{\columncolor{\RowColorName}}#2}{#3}} % For coloured multi-cols \newcolumntype{x}[1]{>{\raggedright}p{#1}} % New column types for ragged-right paragraph columns \newcommand{\tn}{\tabularnewline} % Required as custom column type in use % Font and Colours \definecolor{HeadBackground}{HTML}{333333} \definecolor{FootBackground}{HTML}{666666} \definecolor{TextColor}{HTML}{333333} \definecolor{DarkBackground}{HTML}{A3A3A3} \definecolor{LightBackground}{HTML}{F3F3F3} \renewcommand{\familydefault}{\sfdefault} \color{TextColor} % Header and Footer \pagestyle{fancy} \fancyhead{} % Set header to blank \fancyfoot{} % Set footer to blank \fancyhead[L]{ \noindent \begin{multicols}{3} \begin{tabulary}{5.8cm}{C} \SetRowColor{DarkBackground} \vspace{-7pt} {\parbox{\dimexpr\textwidth-2\fboxsep\relax}{\noindent \hspace*{-6pt}\includegraphics[width=5.8cm]{/web/www.cheatography.com/public/images/cheatography_logo.pdf}} } \end{tabulary} \columnbreak \begin{tabulary}{11cm}{L} \vspace{-2pt}\large{\bf{\textcolor{DarkBackground}{\textrm{Enzymes Cheat Sheet}}}} \\ \normalsize{by \textcolor{DarkBackground}{mjb} via \textcolor{DarkBackground}{\uline{cheatography.com/128288/cs/36078/}}} \end{tabulary} \end{multicols}} \fancyfoot[L]{ \footnotesize \noindent \begin{multicols}{3} \begin{tabulary}{5.8cm}{LL} \SetRowColor{FootBackground} \mymulticolumn{2}{p{5.377cm}}{\bf\textcolor{white}{Cheatographer}} \\ \vspace{-2pt}mjb \\ \uline{cheatography.com/mjb} \\ \end{tabulary} \vfill \columnbreak \begin{tabulary}{5.8cm}{L} \SetRowColor{FootBackground} \mymulticolumn{1}{p{5.377cm}}{\bf\textcolor{white}{Cheat Sheet}} \\ \vspace{-2pt}Not Yet Published.\\ Updated 13th December, 2022.\\ Page {\thepage} of \pageref{LastPage}. \end{tabulary} \vfill \columnbreak \begin{tabulary}{5.8cm}{L} \SetRowColor{FootBackground} \mymulticolumn{1}{p{5.377cm}}{\bf\textcolor{white}{Sponsor}} \\ \SetRowColor{white} \vspace{-5pt} %\includegraphics[width=48px,height=48px]{dave.jpeg} Measure your website readability!\\ www.readability-score.com \end{tabulary} \end{multicols}} \begin{document} \raggedright \raggedcolumns % Set font size to small. Switch to any value % from this page to resize cheat sheet text: % www.emerson.emory.edu/services/latex/latex_169.html \footnotesize % Small font. \begin{multicols*}{3} \begin{tabularx}{5.377cm}{x{2.4885 cm} x{2.4885 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{General Properties of Enzymes}} \tn % Row 0 \SetRowColor{LightBackground} How enzymes differ from ordinary chemical catalysts & faster, milder conditions, specific, regulatable \tn % Row Count 3 (+ 3) % Row 1 \SetRowColor{white} Class 1: Oxidoreductase & Catalyze Redox Reactions \tn % Row Count 5 (+ 2) % Row 2 \SetRowColor{LightBackground} Class 2: Transferases & Transfer of functional groups \tn % Row Count 7 (+ 2) % Row 3 \SetRowColor{white} Class 3: Hydrolases & Hydrolysis Reactions \tn % Row Count 8 (+ 1) % Row 4 \SetRowColor{LightBackground} Class 4: Lyases & Group elimination to form double bonds \tn % Row Count 10 (+ 2) % Row 5 \SetRowColor{white} Class 5: Isomerases & Isomerization \tn % Row Count 11 (+ 1) % Row 6 \SetRowColor{LightBackground} Class 6: Ligases & Bond formation using ATP hydrolysis \tn % Row Count 13 (+ 2) % Row 7 \SetRowColor{white} Cofactors & Can be metal ions or coenzymes. Substances that increase the rate of enzymes in their reactions. \tn % Row Count 18 (+ 5) % Row 8 \SetRowColor{LightBackground} Coenzymes & Are chemically changed, organic, must be regenerated. Can be cosubstrates or prosthetic groups. \tn % Row Count 23 (+ 5) % Row 9 \SetRowColor{white} Cosubstrates & dissociate from enzyme \tn % Row Count 25 (+ 2) % Row 10 \SetRowColor{LightBackground} Prosthetic groups & permanently associated with enzyme \tn % Row Count 27 (+ 2) % Row 11 \SetRowColor{white} Free energy of activation ΔG⁺⁺ & free energy of transition state minus free energy of reactants. When this variable is larger, the reaction is slower. \tn % Row Count 33 (+ 6) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{x{1.84149 cm} x{3.13551 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Enzyme Inhibition}} \tn % Row 0 \SetRowColor{LightBackground} Competitive Inhibitor & Binds at substrate binding site. Reduces concentration of free enzyme available for substrate. Ex: Aspartic Protease \tn % Row Count 5 (+ 5) % Row 1 \SetRowColor{white} Uncompetitive Inhibitor & The inhibitor binds to the enzyme-substrate complex but not to the free enzyme. Distorts SUBSTRATE OCCUPIED active site. \tn % Row Count 10 (+ 5) % Row 2 \SetRowColor{LightBackground} \seqsplit{Mixed/Noncompetitive} & Compounds that bind to the free enzyme AND to the enzyme-substrate complex \tn % Row Count 13 (+ 3) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{x{2.4885 cm} x{2.4885 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Catalytic Mechanisms}} \tn % Row 0 \SetRowColor{LightBackground} 1. Acid Base Catalysis & Ex: RNase, activity is affected by pH \tn % Row Count 2 (+ 2) % Row 1 \SetRowColor{white} Acid Catalysis & enzyme gives substrate a proton \tn % Row Count 4 (+ 2) % Row 2 \SetRowColor{LightBackground} Base Catalysis & enzyme takes proton from substrate \tn % Row Count 6 (+ 2) % Row 3 \SetRowColor{white} Amino acids that act as acids & Asp, Glu \tn % Row Count 8 (+ 2) % Row 4 \SetRowColor{LightBackground} Amino acids that act as bases & Arg, Lys, His \tn % Row Count 10 (+ 2) % Row 5 \SetRowColor{white} 2. Covalent Catalysis & Nucleophilic attack on substrate by enzyme, resulting in temporary covalent bond formation \tn % Row Count 15 (+ 5) % Row 6 \SetRowColor{LightBackground} Nucleophilic groups & Have electrons, want proton \tn % Row Count 17 (+ 2) % Row 7 \SetRowColor{white} Electrophilic groups & Have protons, want electrons \tn % Row Count 19 (+ 2) % Row 8 \SetRowColor{LightBackground} 3. Catalysis through proximity and orientation & bring substrates into contact, freeze out relative rotational and translational motions in transition state \tn % Row Count 25 (+ 6) % Row 9 \SetRowColor{white} 4. Catalysis through binding transition state & strained version of substrate fits in enzyme better than unstrained substrate \tn % Row Count 29 (+ 4) % Row 10 \SetRowColor{LightBackground} & This implies that you can inhibit with a transition state analog \tn % Row Count 33 (+ 4) \end{tabularx} \par\addvspace{1.3em} \vfill \columnbreak \begin{tabularx}{5.377cm}{x{2.4885 cm} x{2.4885 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Catalytic Mechanisms (cont)}} \tn % Row 11 \SetRowColor{LightBackground} 5 Metal ion catalysis & the unique electronic properties of the metal ion facilitate the reaction. \tn % Row Count 4 (+ 4) % Row 12 \SetRowColor{white} Serine Proteases & catalyze peptide bond hydrolysis (breakage) in target proteins. \tn % Row Count 8 (+ 4) % Row 13 \SetRowColor{LightBackground} & proximity and orientation effects, acid–base catalysis, covalent catalysis, electrostatic catalysis, and transition state stabilization. \tn % Row Count 15 (+ 7) % Row 14 \SetRowColor{white} Chymotrypsin & Binds Bulky hydrophobic side chain, cleaved by trypsin \tn % Row Count 18 (+ 3) % Row 15 \SetRowColor{LightBackground} Trypsin & Binds positively charged side chain, cleaved by enteropeptidase \tn % Row Count 22 (+ 4) % Row 16 \SetRowColor{white} Elastase & Binds neutral, small side chains, cleaved by trypsin \tn % Row Count 25 (+ 3) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{5.377cm}{x{2.28942 cm} x{2.68758 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Reaction Kinetics}} \tn % Row 0 \SetRowColor{LightBackground} To find the mechanism of an enzyme & measure kinetics, use X-ray crystalography \tn % Row Count 2 (+ 2) % Row 1 \SetRowColor{white} K, rate constant & the rate of an elementary reaction is proportional to the frequency by which the reacting molecules come together. The proportionality constant is k \tn % Row Count 10 (+ 8) % Row 2 \SetRowColor{LightBackground} V, Reaction Velocity & the instantaneous rate of appearance of product (or disappearance of substrate). \tn % Row Count 14 (+ 4) % Row 3 \SetRowColor{white} Order & the molecularity of a reaction, i.e. the number of molecules that must simultaneously collide to generate a product. \tn % Row Count 20 (+ 6) % Row 4 \SetRowColor{LightBackground} First Order & A -\textgreater{} P, linear \tn % Row Count 21 (+ 1) % Row 5 \SetRowColor{white} Second Order & A + A -\textgreater{} P \tn % Row Count 22 (+ 1) % Row 6 \SetRowColor{LightBackground} Third Order & A + B -\textgreater{} P \tn % Row Count 23 (+ 1) % Row 7 \SetRowColor{white} KS & measure of enzyme affinity for its substrate \tn % Row Count 26 (+ 3) % Row 8 \SetRowColor{LightBackground} Km & the concentration of substrate which permits the enzyme to achieve half Vmax \tn % Row Count 30 (+ 4) \end{tabularx} \par\addvspace{1.3em} \vfill \columnbreak \begin{tabularx}{5.377cm}{x{2.28942 cm} x{2.68758 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{5.377cm}}{\bf\textcolor{white}{Reaction Kinetics (cont)}} \tn % Row 9 \SetRowColor{LightBackground} Bisubstrate reactiona & usually group transfer reactions \tn % Row Count 2 (+ 2) % Row 10 \SetRowColor{white} Sequential reactions & All substrates must combine with the enzyme before reaction can take place and products released. \tn % Row Count 7 (+ 5) % Row 11 \SetRowColor{LightBackground} Ordered & order matters \tn % Row Count 8 (+ 1) % Row 12 \SetRowColor{white} Random & order does not matter \tn % Row Count 9 (+ 1) % Row 13 \SetRowColor{LightBackground} Ping Pong Reaction & One or more products are released before all substrates have been added. • The two substrates do not encounter one another on the enzyme surface. \tn % Row Count 16 (+ 7) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} % That's all folks \end{multicols*} \end{document}