\documentclass[10pt,a4paper]{article} % Packages \usepackage{fancyhdr} % For header and footer \usepackage{multicol} % Allows multicols in tables \usepackage{tabularx} % Intelligent column widths \usepackage{tabulary} % Used in header and footer \usepackage{hhline} % Border under tables \usepackage{graphicx} % For images \usepackage{xcolor} % For hex colours %\usepackage[utf8x]{inputenc} % For unicode character support \usepackage[T1]{fontenc} % Without this we get weird character replacements \usepackage{colortbl} % For coloured tables \usepackage{setspace} % For line height \usepackage{lastpage} % Needed for total page number \usepackage{seqsplit} % Splits long words. %\usepackage{opensans} % Can't make this work so far. Shame. Would be lovely. \usepackage[normalem]{ulem} % For underlining links % Most of the following are not required for the majority % of cheat sheets but are needed for some symbol support. \usepackage{amsmath} % Symbols \usepackage{MnSymbol} % Symbols \usepackage{wasysym} % Symbols %\usepackage[english,german,french,spanish,italian]{babel} % Languages % Document Info \author{ACD Marketing Team (ACD Marketing)} \pdfinfo{ /Title (immuno-oncology.pdf) /Creator (Cheatography) /Author (ACD Marketing Team (ACD Marketing)) /Subject (Immuno-oncology Cheat Sheet) } % Lengths and widths \addtolength{\textwidth}{6cm} \addtolength{\textheight}{-1cm} \addtolength{\hoffset}{-3cm} \addtolength{\voffset}{-2cm} \setlength{\tabcolsep}{0.2cm} % Space between columns \setlength{\headsep}{-12pt} % Reduce space between header and content \setlength{\headheight}{85pt} % If less, LaTeX automatically increases it \renewcommand{\footrulewidth}{0pt} % Remove footer line \renewcommand{\headrulewidth}{0pt} % Remove header line \renewcommand{\seqinsert}{\ifmmode\allowbreak\else\-\fi} % Hyphens in seqsplit % This two commands together give roughly % the right line height in the tables \renewcommand{\arraystretch}{1.3} \onehalfspacing % Commands \newcommand{\SetRowColor}[1]{\noalign{\gdef\RowColorName{#1}}\rowcolor{\RowColorName}} % Shortcut for row colour \newcommand{\mymulticolumn}[3]{\multicolumn{#1}{>{\columncolor{\RowColorName}}#2}{#3}} % For coloured multi-cols \newcolumntype{x}[1]{>{\raggedright}p{#1}} % New column types for ragged-right paragraph columns \newcommand{\tn}{\tabularnewline} % Required as custom column type in use % Font and Colours \definecolor{HeadBackground}{HTML}{333333} \definecolor{FootBackground}{HTML}{666666} \definecolor{TextColor}{HTML}{333333} \definecolor{DarkBackground}{HTML}{A3A3A3} \definecolor{LightBackground}{HTML}{F3F3F3} \renewcommand{\familydefault}{\sfdefault} \color{TextColor} % Header and Footer \pagestyle{fancy} \fancyhead{} % Set header to blank \fancyfoot{} % Set footer to blank \fancyhead[L]{ \noindent \begin{multicols}{3} \begin{tabulary}{5.8cm}{C} \SetRowColor{DarkBackground} \vspace{-7pt} {\parbox{\dimexpr\textwidth-2\fboxsep\relax}{\noindent \hspace*{-6pt}\includegraphics[width=5.8cm]{/web/www.cheatography.com/public/images/cheatography_logo.pdf}} } \end{tabulary} \columnbreak \begin{tabulary}{11cm}{L} \vspace{-2pt}\large{\bf{\textcolor{DarkBackground}{\textrm{Immuno-oncology Cheat Sheet}}}} \\ \normalsize{by \textcolor{DarkBackground}{ACD Marketing Team (ACD Marketing)} via \textcolor{DarkBackground}{\uline{cheatography.com/36805/cs/11595/}}} \end{tabulary} \end{multicols}} \fancyfoot[L]{ \footnotesize \noindent \begin{multicols}{3} \begin{tabulary}{5.8cm}{LL} \SetRowColor{FootBackground} \mymulticolumn{2}{p{5.377cm}}{\bf\textcolor{white}{Cheatographer}} \\ \vspace{-2pt}ACD Marketing Team (ACD Marketing) \\ \uline{cheatography.com/acd-marketing} \\ \uline{\seqsplit{www}.acdbio.com} \end{tabulary} \vfill \columnbreak \begin{tabulary}{5.8cm}{L} \SetRowColor{FootBackground} \mymulticolumn{1}{p{5.377cm}}{\bf\textcolor{white}{Cheat Sheet}} \\ \vspace{-2pt}Not Yet Published.\\ Updated 12th May, 2017.\\ Page {\thepage} of \pageref{LastPage}. \end{tabulary} \vfill \columnbreak \begin{tabulary}{5.8cm}{L} \SetRowColor{FootBackground} \mymulticolumn{1}{p{5.377cm}}{\bf\textcolor{white}{Sponsor}} \\ \SetRowColor{white} \vspace{-5pt} %\includegraphics[width=48px,height=48px]{dave.jpeg} Measure your website readability!\\ www.readability-score.com \end{tabulary} \end{multicols}} \begin{document} \raggedright \raggedcolumns % Set font size to small. Switch to any value % from this page to resize cheat sheet text: % www.emerson.emory.edu/services/latex/latex_169.html \footnotesize % Small font. \begin{multicols*}{2} \begin{tabularx}{8.4cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{8.4cm}}{\bf\textcolor{white}{One minute pitch}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{1}{x{8.4cm}}{} \tn % Row Count 0 (+ 0) \hhline{>{\arrayrulecolor{DarkBackground}}-} \SetRowColor{LightBackground} \mymulticolumn{1}{x{8.4cm}}{RNAscope(R) ISH is the only technology delivering sensitive and specific multiplex detection of any checkpoint marker, in complex tumor environment enabling a better understanding of the tumor/stroma/immune system interaction.} \tn \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{8.4cm}{x{3.04 cm} x{4.96 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{8.4cm}}{\bf\textcolor{white}{Concept - Immuno-oncology}} \tn % Row 0 \SetRowColor{LightBackground} \seqsplit{Immuno-oncology} & Branch of immunology that studies interactions between the immune \seqsplit{system and cancer cells} \tn % Row Count 4 (+ 4) % Row 1 \SetRowColor{white} Cancer Immune Cycle & The cancer immunity cycle describes a process of how one's own immune system can protect the body against cancer. When performing optimally, the cycle is self-sustaining. See image below. \tn % Row Count 12 (+ 8) % Row 2 \SetRowColor{LightBackground} Immune Checkpoint Marker & Immune checkpoint markers are molecules in the immune system that either turn up a signal or turn down the cancer immunity cycle. \tn % Row Count 18 (+ 6) % Row 3 \SetRowColor{white} PDL1-PD1 & Most widely known and studied checkpoint marker. Known to turn down the immune response (pregnancy). Used by cancer to escape the immune cycle. \tn % Row Count 24 (+ 6) % Row 4 \SetRowColor{LightBackground} Immuno-therapy & Use of the immune system to re-establish an efficient cancer immune cycle to treat cancer. Include checkpoint marker therapy, CAR-T cell therapy, therapeutic antibodies, etc \tn % Row Count 32 (+ 8) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{8.4cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{8.4cm}}{\bf\textcolor{white}{Cancer Immune Cycle}} \tn \SetRowColor{LightBackground} \mymulticolumn{1}{p{8.4cm}}{\vspace{1px}\centerline{\includegraphics[width=5.1cm]{/web/www.cheatography.com/public/uploads/acd-marketing_1494282203_Cancer immune cycle.png}}} \tn \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{8.4cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{8.4cm}}{\bf\textcolor{white}{RNAscope probes for each stage of the cycle}} \tn \SetRowColor{LightBackground} \mymulticolumn{1}{p{8.4cm}}{\vspace{1px}\centerline{\includegraphics[width=5.1cm]{/web/www.cheatography.com/public/uploads/acd-marketing_1494282569_RNAscope and cancer immune cycle.png}}} \tn \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{8.4cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{8.4cm}}{\bf\textcolor{white}{Questions to ask}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{1}{x{8.4cm}}{Are you looking to measure the expression of different checkpoint markers in the tumor?} \tn \mymulticolumn{1}{x{8.4cm}}{\hspace*{6 px}\rule{2px}{6px}\hspace*{6 px}We can provide an assay (with high sensitivity and specificity) for any checkpoint marker in 2 weeks} \tn % Row Count 5 (+ 5) % Row 1 \SetRowColor{white} \mymulticolumn{1}{x{8.4cm}}{Are you looking to measure the infiltration of the immune cell in to the tumor?} \tn \mymulticolumn{1}{x{8.4cm}}{\hspace*{6 px}\rule{2px}{6px}\hspace*{6 px}RNAscope ISH allows to visualize which genes are expressed, localize where they are expressed, and quantify the level of expression.} \tn % Row Count 10 (+ 5) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{1}{x{8.4cm}}{Do you want to multiplex your assays?} \tn \mymulticolumn{1}{x{8.4cm}}{\hspace*{6 px}\rule{2px}{6px}\hspace*{6 px}Unlike IHC, RNAscope multiplex ISH requires minimum optimization and can be achieve in few days. Note also that RNAscope ISH can easily be combined with IHC} \tn % Row Count 15 (+ 5) \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{8.4cm}{x{3.04 cm} x{4.96 cm} } \SetRowColor{DarkBackground} \mymulticolumn{2}{x{8.4cm}}{\bf\textcolor{white}{Research Challenges and RNAscope Key Benefits}} \tn % Row 0 \SetRowColor{LightBackground} Morphological context & Cancer tissues are non-uniform and extremely complex structure. Analysis in the context provide unique information to better understand the complex and dynamic relationship between the immune system, the tumor(s) and the environment. While many biomarker analysis technologies are available, most do not provide spatial and cell type-specific information critical for assessing the specific immune cell types with lineage and functional information in the evolving microenvironment of each tumor. \tn % Row Count 21 (+ 21) % Row 1 \SetRowColor{white} Antibody specificity & RNAscope provides specific and sensitive assay for any target gene and is the ideal tool to validate IHC results \tn % Row Count 26 (+ 5) % Row 2 \SetRowColor{LightBackground} Blurry IHC staining & Punctuate dot, easy to read \tn % Row Count 28 (+ 2) % Row 3 \SetRowColor{white} Multiplexing optimization & Multiplexing capabilities are highly desirable in order to obtain comprehensive single cell-level co-expression information and to maximize the use of limited biopsied sample material. Multiplex capability up to 4 targets without extensive optimization (few days versus weeks or months for IHC) \tn % Row Count 41 (+ 13) \hhline{>{\arrayrulecolor{DarkBackground}}--} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{8.4cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{8.4cm}}{\bf\textcolor{white}{Competitor product}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{1}{x{8.4cm}}{IHC - limited by antibody availability, lack of specificity and long/difficult multiplex optimization} \tn % Row Count 3 (+ 3) % Row 1 \SetRowColor{white} \mymulticolumn{1}{x{8.4cm}}{Profiling technology like Nanostring that allows analysis of multi-gene expression signatures. Limitation: lack of morphological context.} \tn % Row Count 6 (+ 3) \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{8.4cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{8.4cm}}{\bf\textcolor{white}{Recommanded products - Academic}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{1}{x{8.4cm}}{RNAscope® Fluorescent Multiplex (320850) for fresh \& fixed frozen C1/C3: stronger channel (low expres sor), C2: slightly weaker channel} \tn % Row Count 3 (+ 3) % Row 1 \SetRowColor{white} \mymulticolumn{1}{x{8.4cm}}{RNAscope® Multiplex Fluorescent v2 (323110) up to 4 targets, but ideal for FFPE, 4-plex: They need 4-Plex Ancillary Kit (323120)} \tn % Row Count 6 (+ 3) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{1}{x{8.4cm}}{RNAscope® 2.5 HD Duplex Reagent Kit (322430)} \tn % Row Count 7 (+ 1) \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{8.4cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{8.4cm}}{\bf\textcolor{white}{Recommanded products - Biopharma}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{1}{x{8.4cm}}{RNAscope® LS Multiplex Fluorescent Assay} \tn % Row Count 1 (+ 1) % Row 1 \SetRowColor{white} \mymulticolumn{1}{x{8.4cm}}{RNAscope® 2.5 LS Duplex Assay} \tn % Row Count 2 (+ 1) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{1}{x{8.4cm}}{RNAscope® Fluorescent Multiplex (320850) for fresh \& fixed frozen C1/C3: stronger channel (low expres sor), C2: slightly weaker channel} \tn % Row Count 5 (+ 3) % Row 3 \SetRowColor{white} \mymulticolumn{1}{x{8.4cm}}{RNAscope® Multiplex Fluorescent v2 (323110) up to 4 targets, but ideal for FFPE, 4-plex: They need 4-Plex Ancillary Kit (323120)} \tn % Row Count 8 (+ 3) \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{8.4cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{8.4cm}}{\bf\textcolor{white}{Key tools/References}} \tn \SetRowColor{white} \mymulticolumn{1}{x{8.4cm}}{- App note \& appendix \newline % Row Count 1 (+ 1) - Probe list \newline % Row Count 2 (+ 1) - Lung Cancer Study flyer \newline % Row Count 3 (+ 1) - Multitude of posters/Pubcrushs \newline % Row Count 4 (+ 1) - 3 min speech \newline % Row Count 5 (+ 1) Find everything in Showpad: Disease/area of research - Immuno-oncology: http://bit.ly/2q7rGHQ% Row Count 7 (+ 2) } \tn \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} % That's all folks \end{multicols*} \end{document}