\documentclass[10pt,a4paper]{article} % Packages \usepackage{fancyhdr} % For header and footer \usepackage{multicol} % Allows multicols in tables \usepackage{tabularx} % Intelligent column widths \usepackage{tabulary} % Used in header and footer \usepackage{hhline} % Border under tables \usepackage{graphicx} % For images \usepackage{xcolor} % For hex colours %\usepackage[utf8x]{inputenc} % For unicode character support \usepackage[T1]{fontenc} % Without this we get weird character replacements \usepackage{colortbl} % For coloured tables \usepackage{setspace} % For line height \usepackage{lastpage} % Needed for total page number \usepackage{seqsplit} % Splits long words. %\usepackage{opensans} % Can't make this work so far. Shame. Would be lovely. \usepackage[normalem]{ulem} % For underlining links % Most of the following are not required for the majority % of cheat sheets but are needed for some symbol support. \usepackage{amsmath} % Symbols \usepackage{MnSymbol} % Symbols \usepackage{wasysym} % Symbols %\usepackage[english,german,french,spanish,italian]{babel} % Languages % Document Info \author{ACD Marketing Team (ACD Marketing)} \pdfinfo{ /Title (breast-cancer-sheet-cheat.pdf) /Creator (Cheatography) /Author (ACD Marketing Team (ACD Marketing)) /Subject (Breast Cancer Sheet Cheat Cheat Sheet) } % Lengths and widths \addtolength{\textwidth}{6cm} \addtolength{\textheight}{-1cm} \addtolength{\hoffset}{-3cm} \addtolength{\voffset}{-2cm} \setlength{\tabcolsep}{0.2cm} % Space between columns \setlength{\headsep}{-12pt} % Reduce space between header and content \setlength{\headheight}{85pt} % If less, LaTeX automatically increases it \renewcommand{\footrulewidth}{0pt} % Remove footer line \renewcommand{\headrulewidth}{0pt} % Remove header line \renewcommand{\seqinsert}{\ifmmode\allowbreak\else\-\fi} % Hyphens in seqsplit % This two commands together give roughly % the right line height in the tables \renewcommand{\arraystretch}{1.3} \onehalfspacing % Commands \newcommand{\SetRowColor}[1]{\noalign{\gdef\RowColorName{#1}}\rowcolor{\RowColorName}} % Shortcut for row colour \newcommand{\mymulticolumn}[3]{\multicolumn{#1}{>{\columncolor{\RowColorName}}#2}{#3}} % For coloured multi-cols \newcolumntype{x}[1]{>{\raggedright}p{#1}} % New column types for ragged-right paragraph columns \newcommand{\tn}{\tabularnewline} % Required as custom column type in use % Font and Colours \definecolor{HeadBackground}{HTML}{333333} \definecolor{FootBackground}{HTML}{666666} \definecolor{TextColor}{HTML}{333333} \definecolor{DarkBackground}{HTML}{0D17A3} \definecolor{LightBackground}{HTML}{F7F7FC} \renewcommand{\familydefault}{\sfdefault} \color{TextColor} % Header and Footer \pagestyle{fancy} \fancyhead{} % Set header to blank \fancyfoot{} % Set footer to blank \fancyhead[L]{ \noindent \begin{multicols}{3} \begin{tabulary}{5.8cm}{C} \SetRowColor{DarkBackground} \vspace{-7pt} {\parbox{\dimexpr\textwidth-2\fboxsep\relax}{\noindent \hspace*{-6pt}\includegraphics[width=5.8cm]{/web/www.cheatography.com/public/images/cheatography_logo.pdf}} } \end{tabulary} \columnbreak \begin{tabulary}{11cm}{L} \vspace{-2pt}\large{\bf{\textcolor{DarkBackground}{\textrm{Breast Cancer Sheet Cheat Cheat Sheet}}}} \\ \normalsize{by \textcolor{DarkBackground}{ACD Marketing Team (ACD Marketing)} via \textcolor{DarkBackground}{\uline{cheatography.com/36805/cs/11888/}}} \end{tabulary} \end{multicols}} \fancyfoot[L]{ \footnotesize \noindent \begin{multicols}{3} \begin{tabulary}{5.8cm}{LL} \SetRowColor{FootBackground} \mymulticolumn{2}{p{5.377cm}}{\bf\textcolor{white}{Cheatographer}} \\ \vspace{-2pt}ACD Marketing Team (ACD Marketing) \\ \uline{cheatography.com/acd-marketing} \\ \uline{\seqsplit{www}.acdbio.com} \end{tabulary} \vfill \columnbreak \begin{tabulary}{5.8cm}{L} \SetRowColor{FootBackground} \mymulticolumn{1}{p{5.377cm}}{\bf\textcolor{white}{Cheat Sheet}} \\ \vspace{-2pt}Not Yet Published.\\ Updated 23rd May, 2017.\\ Page {\thepage} of \pageref{LastPage}. \end{tabulary} \vfill \columnbreak \begin{tabulary}{5.8cm}{L} \SetRowColor{FootBackground} \mymulticolumn{1}{p{5.377cm}}{\bf\textcolor{white}{Sponsor}} \\ \SetRowColor{white} \vspace{-5pt} %\includegraphics[width=48px,height=48px]{dave.jpeg} Measure your website readability!\\ www.readability-score.com \end{tabulary} \end{multicols}} \begin{document} \raggedright \raggedcolumns % Set font size to small. Switch to any value % from this page to resize cheat sheet text: % www.emerson.emory.edu/services/latex/latex_169.html \footnotesize % Small font. \begin{multicols*}{2} \begin{tabularx}{8.4cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{8.4cm}}{\bf\textcolor{white}{One Minute Pitch}} \tn \SetRowColor{white} \mymulticolumn{1}{x{8.4cm}}{Breast cancer is a complex disease with great clinical and molecular heterogeneity that requires accurate assessment of known breast cancer biomarkers, such as HER2, estrogen receptor (ER), and progesterone receptor (PgR), as well as the discovery of emerging potential targets, for the precise treatment of breast tumors. The RNAscope® in situ hybridization assay offers a very reliable and robust method for the detection and validation of breast cancer-related markers within the tissue environment and can be performed on routinely available FFPE samples.% Row Count 12 (+ 12) } \tn \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{8.4cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{8.4cm}}{\bf\textcolor{white}{Applications}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{1}{x{8.4cm}}{Resolution of equivocal and heterogeneous cases of HER2 expression} \tn % Row Count 2 (+ 2) % Row 1 \SetRowColor{white} \mymulticolumn{1}{x{8.4cm}}{Validation of transcriptome data} \tn % Row Count 3 (+ 1) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{1}{x{8.4cm}}{Sub-cellular localization of RNA in breast cancer} \tn % Row Count 4 (+ 1) % Row 3 \SetRowColor{white} \mymulticolumn{1}{x{8.4cm}}{Detection of lncRNAs in breast cancer} \tn % Row Count 5 (+ 1) % Row 4 \SetRowColor{LightBackground} \mymulticolumn{1}{x{8.4cm}}{Preclinical drug efficacy for breast cancer treatment} \tn % Row Count 7 (+ 2) % Row 5 \SetRowColor{white} \mymulticolumn{1}{x{8.4cm}}{Assessment of potential prognostic markers for breast cancer} \tn % Row Count 9 (+ 2) \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{8.4cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{8.4cm}}{\bf\textcolor{white}{Known Breast Cancer Biomarkers}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{1}{x{8.4cm}}{HER2 (ERBB2)} \tn % Row Count 1 (+ 1) % Row 1 \SetRowColor{white} \mymulticolumn{1}{x{8.4cm}}{Estrogen receptor (ESR1)} \tn % Row Count 2 (+ 1) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{1}{x{8.4cm}}{Progesterone receptor (PGR)} \tn % Row Count 3 (+ 1) % Row 3 \SetRowColor{white} \mymulticolumn{1}{x{8.4cm}}{Triple negative breast cancer (TNBC): Negative for HER2, ER, and PR} \tn % Row Count 5 (+ 2) \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{8.4cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{8.4cm}}{\bf\textcolor{white}{Breast Cancer Subtypes}} \tn \SetRowColor{LightBackground} \mymulticolumn{1}{p{8.4cm}}{\vspace{1px}\centerline{\includegraphics[width=5.1cm]{/web/www.cheatography.com/public/uploads/acd-marketing_1495537003_Breast Cancer subtypes.png}}} \tn \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{8.4cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{8.4cm}}{\bf\textcolor{white}{Marketing Materials}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{1}{x{8.4cm}}{{\bf{Breast Caner related publications:}} http://bit.ly/2q3dcKc} \tn % Row Count 2 (+ 2) \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{8.4cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{8.4cm}}{\bf\textcolor{white}{Examples of RNAscope in Breast Cancer Research}} \tn % Row 0 \SetRowColor{LightBackground} \mymulticolumn{1}{x{8.4cm}}{{\bf{Resolution of equivocal and heterogeneous cases of HER2 expression:}} Standard HER2 testing methods are often hampered by equivocal testing and intratumoral heterogeneity. Wang et al. developed a fully automated, quantitative ISH assay using the RNAscope® technology to quantify single-cell HER2 mRNA levels. http://bit.ly/2qGSIWG} \tn % Row Count 7 (+ 7) % Row 1 \SetRowColor{white} \mymulticolumn{1}{x{8.4cm}}{{\bf{Patient-stratification for treatment regimens:}} Vassilakopoulou et al. used the RNAscope® assay to assess HER2 mRNA as a predictor of benefit from trastuzumab-based chemotherapy and to correlate it to HER2 protein and gene levels. http://bit.ly/2rtsyHZ} \tn % Row Count 13 (+ 6) % Row 2 \SetRowColor{LightBackground} \mymulticolumn{1}{x{8.4cm}}{{\bf{Validation of transcriptome data and sub-cellular localization of lncRNA in breast cancer:}} In their study Lin et al. selected lncRNA LINK-A as it shows frequently elevated expression in TNBC patients. RNAscope® ISH confirmed the array results, showing that expression of LINK-A was significantly increased in TNBC tissues. http://bit.ly/2qMojGT} \tn % Row Count 20 (+ 7) % Row 3 \SetRowColor{white} \mymulticolumn{1}{x{8.4cm}}{{\bf{Preclinical drug efficacy for breast cancer treatment:}} FGFR2 gene amplification is found in 4\% of triple-negative breast cancers (TNBC). In their study, Sommer et al. demonstrate the preclinical efficacy of BAY1187982, a novel FGFR2-antibody drug conjugate (ADC). http://bit.ly/2rtlStB} \tn % Row Count 26 (+ 6) % Row 4 \SetRowColor{LightBackground} \mymulticolumn{1}{x{8.4cm}}{{\bf{Assessment of HOTAIR as a prognostic breast cancer biomarker for breast cancer:}} High expression of the large intergenic non-coding RNA (lincRNA) HOTAIR has been shown to be a significant predictor of poor prognosis and metastasis in breast carcinomas. G{\"o}kmen-Polar et al. showed that the prognostic role of HOTAIR is restricted to ER-/lymph node+ tumors, where its expression could be used as a potential prognostic marker. http://bit.ly/2rKKHxs} \tn % Row Count 35 (+ 9) \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} \begin{tabularx}{8.4cm}{X} \SetRowColor{DarkBackground} \mymulticolumn{1}{x{8.4cm}}{\bf\textcolor{white}{Related Breast Cancer Probes}} \tn \SetRowColor{white} \mymulticolumn{1}{x{8.4cm}}{\seqsplit{ABCB1 ABCG2 ADAM23 AKT1 APC AR ATM BAD BCL2 BIRC5 BRCA1 BRCA2 CCNA1 CCND1 CCND2 CCNE1 CDH1 CDH13 CDK2 CDKN1A CDKN1C CDKN2A CSF1 CST6 CTNNB1} \seqsplit{CTSD EGF EGFR ERBB2 ESR1 ESR2 FOXA1 GATA3 GLI1 GRB7 GSTP1 HIC1 ID1 IGF1 IGF1R IGFBP3 IL6 JUN KRT18 KRT19 KRT5 KRT8 MAPK1 MAPK3} \seqsplit{MAPK8 MGMT MKI67 MLH1 MMP2 MMP9 MUC1 MYC NME1 NOTCH1 NR3C1 PGR PLAU PRDM2 PTEN PTGS2 PYCARD RARB RASSF1 RB1 SERPINE1 SFN SFRP1} \seqsplit{SLC39A6 SLIT2 SNAI2 SRC TFF3 TGFB1 THBS1 TP53 TP73 TWIST1 VEGFA XBP1}% Row Count 10 (+ 10) } \tn \hhline{>{\arrayrulecolor{DarkBackground}}-} \end{tabularx} \par\addvspace{1.3em} % That's all folks \end{multicols*} \end{document}